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BaseInfo

ncRNA ID	osa-miR7695-5p
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:11666716-11667202 [-]
Reference genome	MSU7
Source	miRBase
Length	24
Mature sequence(if miRNA)	328 - UGCCUAUGUGGCACGCCACGUGAA - 351
Stem-loop(if miRNA)	C         A                 AG                 C                                     C     C       A                               C      A                                                   CACCACUGC  CAACCCCUCCCCUCGUUCCGCCUCU GAGUAAAAUGCACUAGCGGU CUUAAACUU UCGGGAGGUUUCACUUA  UCCACGAACUUGCAAAG GCACAUCGAGGUCUCUAAACUUGGUUUAUUGUAUCAU CCGGU CAAAGCC CGUUUGAUUGUGGUCUUGCCUAUGUGGCACG CACGUG AUGAUGACAUGGAAUUUUUUUUAUUUUUUUCUCCCUUCUUCCUUCUUUUUU         GA                         C |||||||||||||||||||| ||||||||| |||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||         ||                         A CUCAUUUUAUGUGGUCGCCA GAAUUUGAA AGUCCUCCAAAGUGAAU  AGGUGCUUGAACGUUUC CGUGUAGCUCUAGGGAUUUGAACCAAAUAAUAUAGUA GGCCA GUUUCGG GUAAACUGACACCAGAACGGAUGCACCGUGU GUGCAC UAUUACUGUACCUUAAAAAAAAUAAAAAAAGAGGGAAGAAGGAAGAAAAAA         GA                         C                     A         C                 CU                 A                                     A     A       C                               A      C                                                   --------A  GAAAGAAGGAAGAAAAAAGAGCCAC
Stem-loop sequence	GAGUAAAAUGCACUAGCGGUCCUUAAACUUAUCGGGAGGUUUCACUUAAGUCCACGAACUUGCAAAGCGCACAUCGAGGUCUCUAAACUUGGUUUAUUGUAUCAUCCCGGUCCAAAGCCACGUUUGAUUGUGGUCUUGCCUAUGUGGCACGCCACGUGAAUGAUGACAUGGAAUUUUUUUUAUUUUUUUCUCCCUUCUUCCUUCUUUUUUCACCACUGCGACAACCCCUCCCCUCGUUCCGCCUCUCACCACCGAGAAAAAAGAAGGAAGAAAGAGAAAAAAAGAAGGAAGAAGGGAGAAAAAAAUAAAAAAAAUUCCAUGUCAUUAUCCACGUGAUGUGCCACGUAGGCAAGACCACAGUCAAAUGCGGCUUUGAACCGGAAUGAUAUAAUAAACCAAGUUUAGGGAUCUCGAUGUGCACUUUGCAAGUUCGUGGAUCUAAGUGAAACCUCCUGACAAGUUUAAGAACCGCUGGUGUAUUUUACUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI403654.1	ncRNA:24   AAGUGCACCGCACGGUGUAUCCGU   1   |*||||||||*||||||||||||| targets:223   UCCACGUGGCAUGCCACAUAGGCA   246 Target Full Sequence	1.0	Sequence 1779 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235784.1	ncRNA:24   AAGUGCACCGCACGGUGUAUCCGU   1   |*||||||||*||||||||||||| targets:223   UCCACGUGGCAUGCCACAUAGGCA   246 Target Full Sequence	1.0	Sequence 1779 from Patent EP2985353	NA	coding protein	psRNATarget
JB164115.1	ncRNA:24   AAGUGCACCGCACGGUGUAUCCGU   1   |*||||||||*||||||||||||| targets:223   UCCACGUGGCAUGCCACAUAGGCA   246 Target Full Sequence	1.0	Sequence 1779 from Patent EP2559767	NA	coding protein	psRNATarget
AK241042.1	ncRNA:24   AAGUGCACCGCACGGUGUAUCCGU   1   |*||||||||*||||||=|||||| targets:972   UCCACGUGGCAUGCCACGUAGGCA   995 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065060E23, full insert sequence	NA	coding protein	psRNATarget
XM_015786142.1	ncRNA:24   AAGUGCACCGCACGGUGUAUCCGU   1   *|=|||||*|*||||||||||||| targets:2377   CUUACGUGUCAUGCCACAUAGGCA   2400 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9268543 (LOC9268543), mRNA	uncharacterized LOC9268543(LOC9268543)	coding protein	psRNATarget

Reference

1

PMID:23627500 "Identification of a novel microRNA (miRNA) from rice that targets an alternatively spliced transcript of the Nramp6 (Natural resistance-associated macrophage protein 6) gene involved in pathogen resistance"; Campo S, Peris-Peris C, Sire C, Moreno AB, Donaire L, Zytnicki M, Notredame C, Llave C, San Segundo B; New Phytol. 199:212-227(2013).