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BaseInfo

ncRNA ID osa-miR2097-5p
Species Oryza sativa
Class miRNA
Genome position Chr1:9055603-9055779 [+]
Reference genome MSU7
Source miRBase
Length 22
Mature sequence(if miRNA) 8 - AGAGAUGGGACGGGCAGGGAAG - 29
Stem-loop(if miRNA) -GUGGG         G    G C     AG    UAGA  GAUAGAG       A   G ---G   -AG GG U G  UU    G     CG
      GAAGAGAUG GACG G AGGGA  GAAG    UG       UUUGGGG UAG A    GGA   G  A A AU  GGUU UUUUU  G
      ||||||||| |||| | |||||  ||||    ||       ||||||| ||| |    |||   |  | | ||  |||| |||||
      UUUCUUUAC CUGU C UUCUU  CUUU    AC       GAAUCCC GUC U    UUU   C  U U UG  CCAA AAAAA  A
CGAAAA         G    G -     CU    UAAG  -----GA       C   G GACA   GUA UU U G  UU    A     AA
Stem-loop sequence GUGGGGAAGAGAUGGGACGGGCAGGGAAGGAAGUAGAUGGAUAGAGUUUGGGGAUAGGAGGGAAGGGGAUAGAUUUGGUUGUUUUUCGGAAAAAAAAAAACCUUGUGUUUUUCAUGUUUACAGUGCUGCCCCUAAGAGCAGAAUUUUCUCUUCUUCGUGUCGCAUUUCUUUAAAAGC

Reference

1 PMID:19103661
"Characterization and expression profiles of miRNAs in rice seeds";
Xue LJ, Zhang JJ, Xue HW;
Nucleic Acids Res. 37:916-930(2009).