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BaseInfo

ncRNA ID	osa-miR169a
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:8729104-8729276 [+]
Reference genome	MSU7
Source	miRBase
Length	21
Mature sequence(if miRNA)	38 - CAGCCAAGGAUGACUUGCCGA - 58
Stem-loop(if miRNA)	---   -     G    U    U   A     U    C         UG          C   C   CU       --A      CGCC   GGC GGCCU ACAU GGGA CGG GGCCA GGUG AGCCAAGGA  ACUUGCCGAU GAU GAU  AUCUAUG   AGCUAA ||||   ||| ||||| |||| |||| ||| ||||| |||| |||||||||  |||||||||| ||| |||  |||||||   |||||G GCGG   CCG CCGGA UGUA UCCU GUC CCGGU CUAC UCGGUUCUU  UGAACGGUUA CUA CUA  UAGGUAC   UCGAUC     UGU   G     A    C    C   C     U    A         GU          A   C   CC       CGG
Stem-loop sequence	CGCCGGCGGCCUGACAUUGGGAUCGGAGGCCAUGGUGCAGCCAAGGAUGACUUGCCGAUCGAUCGAUCUAUCUAUGAAGCUAAGCUAGCUGGCCAUGGAUCCAUCCAUCAAUUGGCAAGUUGUUCUUGGCUACAUCUUGGCCCCUGCUCCUCAUGUAAGGCCGGCCUGUGGCG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015790064.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   *=|||||*||||||||||||| targets:1189   GUGGCAAUUCAUCCUUGGCUG   1209 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group nuclear transcription factor Y subunit A-2 (LOC4342440), mRNA	nuclear transcription factor Y subunit A-2(LOC4342440)	coding protein	psRNATarget
AB288032.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   |*|||||*||||=|||||||| targets:1047   UAGGCAACUCAUUCUUGGCUG   1067 Target Full Sequence	2.5	Oryza sativa Japonica Group OsHAP2F mRNA for HAP2 subunit of HAP complex, complete cds	NA	coding protein	psRNATarget
AK073742.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   |*|||||*||||=|||||||| targets:1178   UAGGCAACUCAUUCUUGGCUG   1198 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033067G24, full insert sequence	NA	coding protein	psRNATarget
XM_015762963.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   |*|||||*||||=|||||||| targets:1258   UAGGCAACUCAUUCUUGGCUG   1278 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group nuclear transcription factor Y subunit A-10 (LOC4352811), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-10(LOC4352811)	coding protein	psRNATarget
XM_015762964.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   |*|||||*||||=|||||||| targets:1405   UAGGCAACUCAUUCUUGGCUG   1425 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group nuclear transcription factor Y subunit A-10 (LOC4352811), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-10(LOC4352811)	coding protein	psRNATarget
AB288029.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   *=|||||*||||||||||||* targets:650   AUGGCAAAUCAUCCUUGGCUU   670 Target Full Sequence	2.0	Oryza sativa Japonica Group OsHAP2C mRNA for HAP2 subunit of HAP complex, complete cds	NA	coding protein	psRNATarget
JC611919.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   *=|||||*||||||||||||* targets:807   GUGGCAAUUCAUCCUUGGCUU   827 Target Full Sequence	2.0	Sequence 81 from Patent WO2014106838	NA	coding protein	psRNATarget
Y10905.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   *=|||||*||||||||||||* targets:801   AUGGCAAAUCAUCCUUGGCUU   821 Target Full Sequence	2.0	Oryza sativa mRNA RAPB protein	NA	coding protein	psRNATarget
EU847006.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   *=|||||*||||||||||||* targets:798   AUGGCAAAUCAUCCUUGGCUU   818 Target Full Sequence	2.0	Oryza sativa Japonica Group clone KCS364E08 CCAAT-binding transcription factor mRNA, complete cds	NA	coding protein	psRNATarget
CT832705.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   *=|||||*||||||||||||* targets:822   AUGGCAAAUCAUCCUUGGCUU   842 Target Full Sequence	2.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA105G23, full insert sequence	NA	coding protein	psRNATarget
AB288031.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   *=|||||*||||||||||||* targets:1020   GUGGCAAUUCAUCCUUGGCUU   1040 Target Full Sequence	2.0	Oryza sativa Japonica Group OsHAP2E mRNA for HAP2 subunit of HAP complex, complete cds	NA	coding protein	psRNATarget
XM_015776336.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   *=|||||*||||||||||||* targets:870   AUGGCAAAUCAUCCUUGGCUU   890 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group nuclear transcription factor Y subunit A-7 (LOC4331796), mRNA	nuclear transcription factor Y subunit A-7(LOC4331796)	coding protein	psRNATarget
AK069348.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   *=|||||*||||||||||||* targets:990   AUGGCAAAUCAUCCUUGGCUU   1010 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J023014B08, full insert sequence	NA	coding protein	psRNATarget
AK101684.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   *=|||||*||||||||||||* targets:1166   GUGGCAAUUCAUCCUUGGCUU   1186 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J033058N01, full insert sequence	NA	coding protein	psRNATarget
CT834459.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   *=|||||*||||||||||||* targets:1237   GUGGCAAUUCAUCCUUGGCUU   1257 Target Full Sequence	2.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA222O23, full insert sequence	NA	coding protein	psRNATarget
XM_015791076.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   *=|||||*||||||||||||* targets:1198   GUGGCAAUUCAUCCUUGGCUU   1218 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group nuclear transcription factor Y subunit A-4 (LOC4343866), transcript variant X4, mRNA	nuclear transcription factor Y subunit A-4(LOC4343866)	coding protein	psRNATarget
EU847011.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   *=|||||*||||||||||||* targets:1116   GUGGCAAUUCAUCCUUGGCUU   1136 Target Full Sequence	2.0	Oryza sativa Japonica Group clone KCS132A05 CCAAT-binding transcription factor mRNA, complete cds	NA	coding protein	psRNATarget
XM_015791073.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   *=|||||*||||||||||||* targets:1329   GUGGCAAUUCAUCCUUGGCUU   1349 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group nuclear transcription factor Y subunit A-4 (LOC4343866), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-4(LOC4343866)	coding protein	psRNATarget
AK062135.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   *=|||||*||||||||||||* targets:1244   GUGGCAAUUCAUCCUUGGCUU   1264 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:001-045-F05, full insert sequence	NA	coding protein	psRNATarget
XM_015791075.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   *=|||||*||||||||||||* targets:1353   GUGGCAAUUCAUCCUUGGCUU   1373 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group nuclear transcription factor Y subunit A-4 (LOC4343866), transcript variant X3, mRNA	nuclear transcription factor Y subunit A-4(LOC4343866)	coding protein	psRNATarget
AK071595.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   *=|||||*||||||||||||* targets:1280   GUGGCAAUUCAUCCUUGGCUU   1300 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J023106F21, full insert sequence	NA	coding protein	psRNATarget
XM_015776494.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   *=|||||*||||||||||||* targets:1286   GUGGCAAUUCAUCCUUGGCUU   1306 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group nuclear transcription factor Y subunit A-4 (LOC4333094), mRNA	nuclear transcription factor Y subunit A-4(LOC4333094)	coding protein	psRNATarget
XM_015791074.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   *=|||||*||||||||||||* targets:2327   GUGGCAAUUCAUCCUUGGCUU   2347 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group nuclear transcription factor Y subunit A-4 (LOC4343866), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-4(LOC4343866)	coding protein	psRNATarget
XM_015767949.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   |*|||||*||||||||||||* targets:964   UAGGCAAUUCAUCCUUGGCUU   984 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group nuclear transcription factor Y subunit A-4 (LOC9270863), transcript variant X3, mRNA	nuclear transcription factor Y subunit A-4(LOC9270863)	coding protein	psRNATarget
AK318574.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   |*|||||*||||||||||||* targets:989   UAGGCAAUUCAUCCUUGGCUU   1009 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090045B17, full insert sequence	NA	coding protein	psRNATarget
XM_015767947.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   |*|||||*||||||||||||* targets:1217   UAGGCAAUUCAUCCUUGGCUU   1237 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group nuclear transcription factor Y subunit A-4 (LOC9270863), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-4(LOC9270863)	coding protein	psRNATarget
XM_015767946.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   |*|||||*||||||||||||* targets:1341   UAGGCAAUUCAUCCUUGGCUU   1361 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group nuclear transcription factor Y subunit A-4 (LOC9270863), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-4(LOC9270863)	coding protein	psRNATarget

Reference

1	PMID:12101121 "MicroRNAs in plants"; Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP; Genes Dev. 16:1616-1626(2002).