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BaseInfo

ncRNA ID ath-miR170-5p
Species Arabidopsis thaliana
Class miRNA
Genome position chr5:26411580-26411672 [-]
Reference genome TAIR10
Source miRBase
Length 21
Mature sequence(if miRNA) 56 - UAUUGGCCUGGUUCACUCAGA - 76
Stem-loop(if miRNA)         UC CUCU         C       C      UCUCUUU
CGAGAGAG  C    GAUAUUGGC UGGUUCA UCAGAU       U
||||||||  |    ||||||||| ||||||| ||||||
GCUCUCUC  G    CUAUAACUG GCCGAGU AGUCUA       A
        CU -ACU         U       U      CUCAAUC
Stem-loop sequence CGAGAGAGUCCCUCUGAUAUUGGCCUGGUUCACUCAGAUUCUCUUUUACUAACUCAUCUGAUUGAGCCGUGUCAAUAUCUCAGUCCUCUCUCG

Reference

1 PMID:12101121
"MicroRNAs in plants";
Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
Genes Dev. 16:1616-1626(2002).
2 PMID:12202040
"Prediction of plant microRNA targets";
Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP;
Cell. 110:513-520(2002).
3 PMID:16040653
"Expression of Arabidopsis MIRNA genes";
Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
Plant Physiol. 138:2145-2154(2005).
4 PMID:16954541
"MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant";
Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
Genome Res. 16:1276-1288(2006).
5 PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana";
Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
Genes Dev. 20:3407-3425(2006).