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BaseInfo

ncRNA ID	osa-miR5143b
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:8415808-8415998 [-]
Reference genome	MSU7
Source	miRBase
Length	24
Mature sequence(if miRNA)	11 - UGUGGUAUGUUGGCAAUGUAGGAA - 34
Stem-loop(if miRNA)	UGAC   U      -      A            CA   U    UG  G  -C  AUGUUGCCCUGUUUACCACUAUUAAUCAAGACACUCCCCCU     UCA GCUUCC AUGUUG CCAACAUACCAC  AAA AUUA  AU UU  GC                                         C     ||| |||||| |||||| ||||||||||||  ||| ||||  || ||  ||                                         C     AGU UGAAGG UGUAAC GGUUGUAUGGUG  UUU UAAU  UG AA  GG                                         U GGUA   C      A      -            UC   -    GU  G  UC  ACAAAUGGUUAUAUAACUACAAGUGGUCCUUUUGUUUUCUC
Stem-loop sequence	UGACUCAUGCUUCCAUGUUGACCAACAUACCACCAAAAUAUUAUGAUGUUCGCAUGUUGCCCUGUUUACCACUAUUAAUCAAGACACUCCCCCUCCUCUCUUUUGUUUUCCUGGUGAACAUCAAUAUAUUGGUAAACAGGCUAAGGUUGUAAUUUUCUGUGGUAUGUUGGCAAUGUAGGAAGUCUGAAUGG

Reference

1	PMID:22158467 "Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage"; Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ; Plant Cell. 23:4185-4207(2011).