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BaseInfo

ncRNA ID osa-miR1426
Species Oryza sativa
Class miRNA
Genome position Chr1:7189218-7189347 [-]
Reference genome MSU7
Source miRBase
Length 21
Mature sequence(if miRNA) 106 - AGAAUCUUGAUGAUGAUUAAA - 126
Stem-loop(if miRNA) AAAUA   UC    UG       AA  GA   -ACGAUA   AGGCCGUGAAGCAAAUAUGUAAG
     GAA  UUGA  AUGAUUA  AG  GGG       GGC                       A
     |||  ||||  |||||||  ||  |||       |||
     CUU  AGCU  UACUAAU  UU  CCC       AAG                       C
-AAAA   UU    UA       AG  AC   AAAAAAA   UGAAAGAUCUUAAGGGCCGUUGG
Stem-loop sequence AAAUAGAAUCUUGAUGAUGAUUAAAAGGAGGGACGAUAGGCAGGCCGUGAAGCAAAUAUGUAAGACGGUUGCCGGGAAUUCUAGAAAGUGAAAAAAAAACCCCAUUGAUAAUCAUAUUCGAUUUUCAAAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK119459.1
ncRNA:21   AAAUUAGUAGUAGUUCUAAGA   1
  ***|||||||||||||||||*
targets:15   CAAAAUCAUCAUCAAGAUUCA   35

2.0 Oryza sativa Japonica Group cDNA clone:001-133-E07, full insert sequence NA coding protein psRNATarget

Reference

1 PMID:18353984
"Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)";
Lu C, Jeong DH, Kulkarni K, Pillay M, Nobuta K, German R, Thatcher SR, Maher C, Zhang L, Ware D, Liu B, Cao X, Meyers BC, Green PJ;
Proc Natl Acad Sci U S A. 105:4951-4956(2008).