Search result

BaseInfo

ncRNA ID	osa-miR159f
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:6693112-6693299 [+]
Reference genome	MSU7
Source	miRBase
Length	21
Mature sequence(if miRNA)	158 - CUUGGAUUGAAGGGAGCUCUA - 178
Stem-loop(if miRNA)	GAAGAAGAAGAC                  UC  G         ----    A  AUG  G  G    U     G U    C    -     U  C             GAGCUCCCUUCGAUCCAA  CA GAGAGGAAG    UGGU GG   CA CU CCGG UCAUG A ACCU UGCA GUGCA GU G             ||||||||||||||||||  || |||||||||    |||| ||   || || |||| ||||| | |||| |||| ||||| || U             CUCGAGGGAAGUUAGGUU  GU UUCUCCUUC    ACCA CC   GU GA GGCC AGUAC U UGGG ACGU CACGU CG A CUCUCUCCACAU                  -C  A         UGUU    C  -AA  A  G    C     G U    U    U     U  G
Stem-loop sequence	GAAGAAGAAGACGAGCUCCCUUCGAUCCAAUCCAGGAGAGGAAGUGGUAGGAUGCAGCUGCCGGUUCAUGGAUACCUCUGCAGUGCAUGUCGUAGGCUUGCACUUGCAUGGGUUUGCAUGACCCGGGAGAUGAACCCACCAUUGUCUUCCUCUUAUGCUUGGAUUGAAGGGAGCUCUACACCUCUCUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015783617.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUC   1   |=||||||||||=|||||||* targets:1068   UGGAGCUCCCUUUAAUCCAAU   1088 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group transcription factor GAMYB (LOC4339167), mRNA	transcription factor GAMYB(LOC4339167)	coding protein	psRNATarget
D88621.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUC   1   |=||||||||||=|||||||* targets:1071   UGGAGCUCCCUUUAAUCCAAU   1091 Target Full Sequence	2.5	Oryza sativa mRNA for OSMYB5, complete cds	NA	coding protein	psRNATarget
AK119607.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUC   1   |=||||||||||||*|||||| targets:1260   UGGAGCUCCCUUCACUCCAAG   1280 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-117-F06, full insert sequence	NA	coding protein	psRNATarget
CT830881.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUC   1   |=||||||||||||*|||||| targets:1182   UGGAGCUCCCUUCACUCCAAG   1202 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA206M18, full insert sequence	NA	coding protein	psRNATarget
CT830884.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUC   1   |=||||||||||||*|||||| targets:1258   UGGAGCUCCCUUCACUCCAAG   1278 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA248K02, full insert sequence	NA	coding protein	psRNATarget
XM_015766850.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUC   1   |=||||||||||||*|||||| targets:1279   UGGAGCUCCCUUCACUCCAAG   1299 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group transcription factor GAMYB (LOC4327362), transcript variant X2, mRNA	transcription factor GAMYB(LOC4327362)	coding protein	psRNATarget
CT830883.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUC   1   |=||||||||||||*|||||| targets:1258   UGGAGCUCCCUUCACUCCAAG   1278 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA248F23, full insert sequence	NA	coding protein	psRNATarget
AK102841.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUC   1   |=||||||||||||*|||||| targets:1259   UGGAGCUCCCUUCACUCCAAG   1279 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J033109N02, full insert sequence	NA	coding protein	psRNATarget
CT830882.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUC   1   |=||||||||||||*|||||| targets:1260   UGGAGCUCCCUUCACUCCAAG   1280 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA246D08, full insert sequence	NA	coding protein	psRNATarget
X98355.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUC   1   |=||||||||||||*|||||| targets:1351   UGGAGCUCCCUUCACUCCAAG   1371 Target Full Sequence	1.5	O.sativa mRNA for transcription activator, GAMyb	NA	coding protein	psRNATarget
AK063951.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUC   1   |=||||||||||||*|||||| targets:1257   UGGAGCUCCCUUCACUCCAAG   1277 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:001-123-F05, full insert sequence	NA	coding protein	psRNATarget
XM_015766849.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUC   1   |=||||||||||||*|||||| targets:1348   UGGAGCUCCCUUCACUCCAAG   1368 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group transcription factor GAMYB (LOC4327362), transcript variant X1, mRNA	transcription factor GAMYB(LOC4327362)	coding protein	psRNATarget
AK106613.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUC   1   ||||||||||||||*|||||* targets:403   UAGAGCUCCCUUCACUCCAAU   423 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-112-G09, full insert sequence	NA	coding protein	psRNATarget
XM_015785637.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUC   1   ||||||||||||||*|||||* targets:1063   UAGAGCUCCCUUCACUCCAAU   1083 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group transcription factor GAMYB (LOC4341475), mRNA	transcription factor GAMYB(LOC4341475)	coding protein	psRNATarget
AB212075.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUC   1   ||||||||||||||*|||||* targets:1418   UAGAGCUCCCUUCACUCCAAU   1438 Target Full Sequence	2.5	Oryza sativa Japonica Group mRNA for GAMYB-like1, complete cds	NA	coding protein	psRNATarget
XM_015755754.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUC   1   *=|||||||*||||||||||* targets:1485   CGGAGCUCCAUUCAAUCCAAC   1505 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein transport protein sec31 (LOC9268165), mRNA	protein transport protein sec31(LOC9268165)	coding protein	psRNATarget
XM_015773879.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUC   1   **|||||||||||||*||||* targets:1013   CCGAGCUCCCUUCAAGCCAAU   1033 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group myb-related protein P (LOC4333315), mRNA	myb-related protein P(LOC4333315)	coding protein	psRNATarget

Reference

1	PMID:15200956 "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"; Jones-Rhoades MW, Bartel DP; Mol Cell. 14:787-799(2004).