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BaseInfo

ncRNA ID	osa-miR319b
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:6677570-6677766 [-]
Reference genome	MSU7
Source	miRBase
Length	20
Mature sequence(if miRNA)	11 - UUGGACUGAAGGGUGCUCCC - 30
Stem-loop(if miRNA)	--  U   U   A A    GU           CU  U         UA      -   --  G  G   AC        C  CA   C    AAGAAA    UG   GA GGA GGA G GAGC  CCUUCAGUCCA  CA GGGCGGUGC  GGGUCG AAU  UA CU CCG  UCAUUCAC CA  UGC AAGC      CGCU  A   || ||| ||| | ||||  |||||||||||  || |||||||||  |||||| |||  || || |||  |||||||| ||  ||| ||||      ||||   CU CCU CCU C CUCG  GGAAGUCAGGU  GU UCUGCCGCG  UCUAGC UUG  AU GA GGC  AGUAAGUG GU  ACG UUCG      GCGA  G AG  -   -   C -    UG           UC  U         -C      C   CA  G  G   GA        A  AG   A    ----AA    UA
Stem-loop sequence	GAUGGAUGGAAGAGAGCGUCCUUCAGUCCACUCAUGGGCGGUGCUAGGGUCGAAUUAGCUGCCGACUCAUUCACCCACAUGCCAAGCAAGAAACGCUUGAGAUAGCGAAGCUUAGCAGAUGAGUGAAUGAAGCGGGAGGUAACGUUCCGAUCUCGCGCCGUCUUUGCUUGGACUGAAGGGUGCUCCCUCCUCCUCGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK106830.1	ncRNA:20   CCCUCGUGGGAAGUCAGGUU   1   *||=||||*||||||||||| targets:626   CGGGGCACACUUCAGUCCAA   645 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-116-F07, full insert sequence	NA	coding protein	psRNATarget
AB071808.1	ncRNA:20   CCCUCGUGGGAAGUCAGGUU   1   *||=||||*||||||||||| targets:817   CGGGGCACACUUCAGUCCAA   836 Target Full Sequence	2.5	Oryza sativa Japonica Group mRNA for transcription factor PCF8, partial cds	NA	coding protein	psRNATarget
XM_015763846.1	ncRNA:20   CCCUCGUGGGAAGUCAGGUU   1   *||=||||*||||||||||| targets:910   CGGGGCACACUUCAGUCCAA   929 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group transcription factor PCF8 (LOC4352799), mRNA	transcription factor PCF8(LOC4352799)	coding protein	psRNATarget
AK119607.1	ncRNA:20   CCCUCGUGGGAAGUCAGGUU   1   *|||||*|||||||*||||| targets:1260   UGGAGCUCCCUUCACUCCAA   1279 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-117-F06, full insert sequence	NA	coding protein	psRNATarget
CT830881.1	ncRNA:20   CCCUCGUGGGAAGUCAGGUU   1   *|||||*|||||||*||||| targets:1182   UGGAGCUCCCUUCACUCCAA   1201 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA206M18, full insert sequence	NA	coding protein	psRNATarget
CT830884.1	ncRNA:20   CCCUCGUGGGAAGUCAGGUU   1   *|||||*|||||||*||||| targets:1258   UGGAGCUCCCUUCACUCCAA   1277 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA248K02, full insert sequence	NA	coding protein	psRNATarget
XM_015766850.1	ncRNA:20   CCCUCGUGGGAAGUCAGGUU   1   *|||||*|||||||*||||| targets:1279   UGGAGCUCCCUUCACUCCAA   1298 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group transcription factor GAMYB (LOC4327362), transcript variant X2, mRNA	transcription factor GAMYB(LOC4327362)	coding protein	psRNATarget
CT830883.1	ncRNA:20   CCCUCGUGGGAAGUCAGGUU   1   *|||||*|||||||*||||| targets:1258   UGGAGCUCCCUUCACUCCAA   1277 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA248F23, full insert sequence	NA	coding protein	psRNATarget
AK102841.1	ncRNA:20   CCCUCGUGGGAAGUCAGGUU   1   *|||||*|||||||*||||| targets:1259   UGGAGCUCCCUUCACUCCAA   1278 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033109N02, full insert sequence	NA	coding protein	psRNATarget
CT830882.1	ncRNA:20   CCCUCGUGGGAAGUCAGGUU   1   *|||||*|||||||*||||| targets:1260   UGGAGCUCCCUUCACUCCAA   1279 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA246D08, full insert sequence	NA	coding protein	psRNATarget
X98355.1	ncRNA:20   CCCUCGUGGGAAGUCAGGUU   1   *|||||*|||||||*||||| targets:1351   UGGAGCUCCCUUCACUCCAA   1370 Target Full Sequence	2.5	O.sativa mRNA for transcription activator, GAMyb	NA	coding protein	psRNATarget
AK063951.1	ncRNA:20   CCCUCGUGGGAAGUCAGGUU   1   *|||||*|||||||*||||| targets:1257   UGGAGCUCCCUUCACUCCAA   1276 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-123-F05, full insert sequence	NA	coding protein	psRNATarget
XM_015766849.1	ncRNA:20   CCCUCGUGGGAAGUCAGGUU   1   *|||||*|||||||*||||| targets:1348   UGGAGCUCCCUUCACUCCAA   1367 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group transcription factor GAMYB (LOC4327362), transcript variant X1, mRNA	transcription factor GAMYB(LOC4327362)	coding protein	psRNATarget

Reference

1	PMID:15200956 "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"; Jones-Rhoades MW, Bartel DP; Mol Cell. 14:787-799(2004).