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BaseInfo

ncRNA ID	osa-miR159c
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:6556048-6556244 [-]
Reference genome	MSU7
Source	miRBase
Length	21
Mature sequence(if miRNA)	11 - AUUGGAUUGAAGGGAGCUCCA - 31
Stem-loop(if miRNA)	GA   A A                    U   G        ----    A  AUG  G  G   AU     G U    C  -       U   -A   A GAG  GGA G GGAGCUCCUUUCGAUCCAAU CAG AGAGGAAG    UGGU GG   CA CU CCG  UCAUG A ACCU UG GAGUGCA GGC  GCA U |||  ||| | |||||||||||||||||||| ||| ||||||||    |||| ||   || || |||  ||||| | |||| || ||||||| |||  ||| CUC  UCU C CCUCGAGGGAAGUUAGGUUA GUU UCUCCUUC    ACCA CC   GU GA GGC  AGUAC U UGGG AC UUCACGU CCG  UGU G    UC   A A                    -   A        UGUU    C  -AA  A  G   CC     G U    U  G       -   GA   C
Stem-loop sequence	GAGGAGGAAGAGGAGCUCCUUUCGAUCCAAUUCAGGAGAGGAAGUGGUAGGAUGCAGCUGCCGAUUCAUGGAUACCUCUGGAGUGCAUGGCAGCAAUGCUGUAGGCCUGCACUUGCAUGGGUUUGCAUGACCCGGGAGAUGAACCCACCAUUGUCUUCCUCUAUUGAUUGGAUUGAAGGGAGCUCCACAUCUCUCUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015783617.1	ncRNA:21   ACCUCGAGGGAAGUUAGGUUA   1   ||||||||||||=|||||||| targets:1068   UGGAGCUCCCUUUAAUCCAAU   1088 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group transcription factor GAMYB (LOC4339167), mRNA	transcription factor GAMYB(LOC4339167)	coding protein	psRNATarget
D88621.1	ncRNA:21   ACCUCGAGGGAAGUUAGGUUA   1   ||||||||||||=|||||||| targets:1071   UGGAGCUCCCUUUAAUCCAAU   1091 Target Full Sequence	1.5	Oryza sativa mRNA for OSMYB5, complete cds	NA	coding protein	psRNATarget
AK119607.1	ncRNA:21   ACCUCGAGGGAAGUUAGGUUA   1   ||||||||||||||*|||||* targets:1260   UGGAGCUCCCUUCACUCCAAG   1280 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-117-F06, full insert sequence	NA	coding protein	psRNATarget
CT830881.1	ncRNA:21   ACCUCGAGGGAAGUUAGGUUA   1   ||||||||||||||*|||||* targets:1182   UGGAGCUCCCUUCACUCCAAG   1202 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA206M18, full insert sequence	NA	coding protein	psRNATarget
CT830884.1	ncRNA:21   ACCUCGAGGGAAGUUAGGUUA   1   ||||||||||||||*|||||* targets:1258   UGGAGCUCCCUUCACUCCAAG   1278 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA248K02, full insert sequence	NA	coding protein	psRNATarget
XM_015766850.1	ncRNA:21   ACCUCGAGGGAAGUUAGGUUA   1   ||||||||||||||*|||||* targets:1279   UGGAGCUCCCUUCACUCCAAG   1299 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group transcription factor GAMYB (LOC4327362), transcript variant X2, mRNA	transcription factor GAMYB(LOC4327362)	coding protein	psRNATarget
CT830883.1	ncRNA:21   ACCUCGAGGGAAGUUAGGUUA   1   ||||||||||||||*|||||* targets:1258   UGGAGCUCCCUUCACUCCAAG   1278 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA248F23, full insert sequence	NA	coding protein	psRNATarget
AK102841.1	ncRNA:21   ACCUCGAGGGAAGUUAGGUUA   1   ||||||||||||||*|||||* targets:1259   UGGAGCUCCCUUCACUCCAAG   1279 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033109N02, full insert sequence	NA	coding protein	psRNATarget
CT830882.1	ncRNA:21   ACCUCGAGGGAAGUUAGGUUA   1   ||||||||||||||*|||||* targets:1260   UGGAGCUCCCUUCACUCCAAG   1280 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA246D08, full insert sequence	NA	coding protein	psRNATarget
X98355.1	ncRNA:21   ACCUCGAGGGAAGUUAGGUUA   1   ||||||||||||||*|||||* targets:1351   UGGAGCUCCCUUCACUCCAAG   1371 Target Full Sequence	2.5	O.sativa mRNA for transcription activator, GAMyb	NA	coding protein	psRNATarget
AK063951.1	ncRNA:21   ACCUCGAGGGAAGUUAGGUUA   1   ||||||||||||||*|||||* targets:1257   UGGAGCUCCCUUCACUCCAAG   1277 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-123-F05, full insert sequence	NA	coding protein	psRNATarget
XM_015766849.1	ncRNA:21   ACCUCGAGGGAAGUUAGGUUA   1   ||||||||||||||*|||||* targets:1348   UGGAGCUCCCUUCACUCCAAG   1368 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group transcription factor GAMYB (LOC4327362), transcript variant X1, mRNA	transcription factor GAMYB(LOC4327362)	coding protein	psRNATarget
XM_015773879.1	ncRNA:21   ACCUCGAGGGAAGUUAGGUUA   1   **|||||||||||||*||||| targets:1013   CCGAGCUCCCUUCAAGCCAAU   1033 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group myb-related protein P (LOC4333315), mRNA	myb-related protein P(LOC4333315)	coding protein	psRNATarget
XM_015755754.1	ncRNA:21   ACCUCGAGGGAAGUUAGGUUA   1   *||||||||*||||||||||* targets:1485   CGGAGCUCCAUUCAAUCCAAC   1505 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein transport protein sec31 (LOC9268165), mRNA	protein transport protein sec31(LOC9268165)	coding protein	psRNATarget
XM_015757264.1	ncRNA:21   ACCUCGAGGGAAGUUAGGUUA   1   |***||||||||||||||||* targets:339   UUUUGCUCCCUUCAAUCCAAG   359 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group E3 ubiquitin-protein ligase At3g02290 (LOC4348088), transcript variant X3, mRNA	E3 ubiquitin-protein ligase At3g02290(LOC4348088)	coding protein	psRNATarget

Reference

1	PMID:15200956 "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"; Jones-Rhoades MW, Bartel DP; Mol Cell. 14:787-799(2004).