Search result

BaseInfo

ncRNA ID	osa-miR2096-5p
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:6443388-6443624 [+]
Reference genome	MSU7
Source	miRBase
Length	21
Mature sequence(if miRNA)	11 - UGCCGAUUUCCCCCUCGGGCG - 31
Stem-loop(if miRNA)	--      GCA              C                    G  GCCG           A      GCGA     CACUGAAAUUACCGCGCCAUCUUAUCUCCGCAAGUUGAAGAAU   GACGCC   CUGCCGAUUUCCCC UCGGGCGAGCCAUCGGAGCG GG    UUGGCUCCCAA GCAGAC    GAAUU                                           A   ||||||   |||||||||||||| |||||||||||||||||||| ||    ||||||||||| ||||||    |||||                                           U   UUGCGG   GGCGGCUAAAGGGG AGUCCGCUCGGUAGCUUUGC CC    AACCGAGGGUU CGUCUG    AUACA                                           A GU      -AG              -                    G  ----           -      ---U     UCAUCAUCUGUGUACUUAAGUGAUUUUUAAUGACGCGGGCUUA
Stem-loop sequence	GACGCCGCACUGCCGAUUUCCCCCUCGGGCGAGCCAUCGGAGCGGGGGCCGUUGGCUCCCAAAGCAGACGCGAGAAUUCACUGAAAUUACCGCGCCAUCUUAUCUCCGCAAGUUGAAGAAUAUAAUUCGGGCGCAGUAAUUUUUAGUGAAUUCAUGUGUCUACUACUACAUAUGUCUGCUUGGGAGCCAACCGCGUUUCGAUGGCUCGCCUGAGGGGAAAUCGGCGGGAGGCGUUUG

Reference

1	PMID:19103661 "Characterization and expression profiles of miRNAs in rice seeds"; Xue LJ, Zhang JJ, Xue HW; Nucleic Acids Res. 37:916-930(2009).