ncRNA ID | novel_vvi_miR947 |
Species | Vitis vinifera |
Class | miRNA |
Genome position | Chr7:4718872-4719047 [-] |
Reference genome | 12X |
Source | SRR1528363;SRR1528372;SRR1528380;SRR1528391 |
Length | 24 |
Mature sequence(if miRNA) | 153 - ACUUUGGAGAAGUUCUUGAAUCCU - 176 |
Stem-loop(if miRNA) |
--AC  UG   AA           CUCA    U        AA  -       GC  A     A      U       UUAU     AA     UU  GAG  GUUCUUGAAUC    CAAG CAAUAAUG  GA GAUAAAU  AU CUUAA UACUAU AGUAGGG    CUUCC  A     ||  |||  |||||||||||    |||| ||||||||  || |||||||  || ||||| |||||| |||||||    |||||  G     AA  UUC  CGAGGAUUUAG    GUUU GUUAUUAU  UU CUGUUUA  UA GAAUU AUGAUA UCAUUCU    GAAGG  A CGUU  GU   AA           -UUA    U        AG  A       AA  A     G      -       CUCU     GU |
Stem-loop sequence | ACUUUGGAGAAGUUCUUGAAUCCUCACAAGUCAAUAAUGAAGAGAUAAAUGCAUACUUAAAUACUAUUAGUAGGGUUAUCUUCCAAAGAUGGGAAGUCUCUCUUACUAUAGUAGUUAAGAAUAAAUUUGUCAUUGAUAUUAUUGUUUUGAUUGAUUUAGGAGCAACUUUGAAUUGC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_002282149.3 |
|
2.5 | PREDICTED: Vitis vinifera cytochrome P450 86B1 (LOC100250807), mRNA | NA | coding protein | psRNATarget |