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BaseInfo

ncRNA ID novel_vvi_miR947
Species Vitis vinifera
Class miRNA
Genome position Chr7:4718872-4719047 [-]
Reference genome 12X
Source SRR1528363;SRR1528372;SRR1528380;SRR1528391
Length 24
Mature sequence(if miRNA) 153 - ACUUUGGAGAAGUUCUUGAAUCCU - 176
Stem-loop(if miRNA) --AC  UG   AA           CUCA    U        AA  -       GC  A     A      U       UUAU     AA
    UU  GAG  GUUCUUGAAUC    CAAG CAAUAAUG  GA GAUAAAU  AU CUUAA UACUAU AGUAGGG    CUUCC  A
    ||  |||  |||||||||||    |||| ||||||||  || |||||||  || ||||| |||||| |||||||    |||||  G
    AA  UUC  CGAGGAUUUAG    GUUU GUUAUUAU  UU CUGUUUA  UA GAAUU AUGAUA UCAUUCU    GAAGG  A
CGUU  GU   AA           -UUA    U        AG  A       AA  A     G      -       CUCU     GU
Stem-loop sequence ACUUUGGAGAAGUUCUUGAAUCCUCACAAGUCAAUAAUGAAGAGAUAAAUGCAUACUUAAAUACUAUUAGUAGGGUUAUCUUCCAAAGAUGGGAAGUCUCUCUUACUAUAGUAGUUAAGAAUAAAUUUGUCAUUGAUAUUAUUGUUUUGAUUGAUUUAGGAGCAACUUUGAAUUGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_002282149.3
ncRNA:24   UCCUAAGUUCUUGAAGAGGUUUCA   1
  |||-||||||||||||*||||||*
targets:398   AGG-UUCAAGAACUUCCCCAAAGG   420

2.5 PREDICTED: Vitis vinifera cytochrome P450 86B1 (LOC100250807), mRNA NA coding protein psRNATarget