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BaseInfo

ncRNA ID	osa-miR5817
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:5990125-5990276 [+]
Reference genome	MSU7
Source	miRBase
Length	24
Mature sequence(if miRNA)	11 - AUCGAAUUUGAAAGAAAAAGGUAU - 34
Stem-loop(if miRNA)	AAC   U     C   UU   A  AAA     AUAC   A     ---    CUUGAGGGAUUAGAAUCCACUCCCU    UAU UGCAU GAA  UGA AG   AAGGU    GAG GGAUA   UCCC                         A    ||| ||||| |||  ||| ||   |||||    ||| |||||   ||||    GUA ACGUG CUU  ACU UC   UUUCA    UUC GAGAU   UGCU                         U UUC   C     C   UU   C  ACC     ACAU   -     GUU    UGUGUUGGAAUUAGGUAAUCUCGAA
Stem-loop sequence	AACUAUUUGCAUCGAAUUUGAAAGAAAAAGGUAUACGAGAGGAUAUCCCCUUGAGGGAUUAGAAUCCACUCCCUAUAAGCUCUAAUGGAUUAAGGUUGUGUUCGUUUGUAGAGCUUUACAACUUUCCACUCUCAUUUUCCGUGCACAUGCUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT833676.1	ncRNA:24   UAUGGAAAAAGAAAGUUUAAGCUA   1   |||==|||||||||=||||||||| targets:793   AUAUUUUUUUCUUUUAAAUUCGAU   816 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA041C07, full insert sequence	NA	coding protein	psRNATarget
CT834684.1	ncRNA:24   UAUGGAAAAAGAAAGUUUAAGCUA   1   |||==|||||||||=||||||||| targets:796   AUAUUUUUUUCUUUUAAAUUCGAU   819 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN064H11, full insert sequence	NA	coding protein	psRNATarget
XM_015777663.1	ncRNA:24   UAUGGAAAAAGAAAGUUUAAGCUA   1   |||=|||||||||*|||||||||| targets:1892   AUAUCUUUUUCUUCCAAAUUCGAU   1915 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4334853 (LOC4334853), mRNA	uncharacterized LOC4334853(LOC4334853)	coding protein	psRNATarget
AK061723.1	ncRNA:24   UAUGGAAAAAGAAAGUUUAAGCUA   1   |||=|||||||||*|||||||||| targets:753   AUAUCUUUUUCUUCCAAAUUCGAU   776 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:001-038-A06, full insert sequence	NA	coding protein	psRNATarget
AK064976.1	ncRNA:24   UAUGGAAAAAGAAAGUUUAAGCUA   1   |||=|||||||||*|||||||||| targets:763   AUAUCUUUUUCUUCCAAAUUCGAU   786 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013001B23, full insert sequence	NA	coding protein	psRNATarget
XM_015776575.1	ncRNA:24   UAUGGAAAAAGAAAGUUUAAGCUA   1   ||*|=|||||=||||||*|||||| targets:609   AUCCUUUUUUUUUUCAAUUUCGAU   632 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4333577 (LOC4333577), mRNA	uncharacterized LOC4333577(LOC4333577)	coding protein	psRNATarget

Reference

1	PMID:22158467 "Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage"; Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ; Plant Cell. 23:4185-4207(2011).