Search result

BaseInfo

ncRNA ID	novel_vvi_miR940
Species	Vitis vinifera
Class	miRNA
Genome position	Chr5:22809457-22809505 [+]
Reference genome	12X
Source	SRR1528363
Length	21
Mature sequence(if miRNA)	1 - CCUAGGAUUCGAACUCAAGAC - 21
Stem-loop(if miRNA)	--C      -UU     U     CC    CUAGGA   CGAAC CAAGA  U    ||||||   ||||| |||||  U    GGUCCU   GUUUG GUUUU  A CAU      CCC     -     CA
Stem-loop sequence	CCUAGGAUUCGAACUCAAGACCUUAACUUUUGGUUUGCCCUCCUGGUAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_002270850.4	ncRNA:21   CAGAACUCAAGCUUAGGAUCC   1   |*||||||||||||||||=|| targets:850   GACUUGAGUUCGAAUCCUGGG   870 Target Full Sequence	1.5	PREDICTED: Vitis vinifera receptor-like cytosolic serine/threonine-protein kinase RBK2 (LOC100240843), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_010665591.2	ncRNA:21   CAGAACUCAAGCUUAGGAUCC   1   |*||||=|||||||||||=|| targets:3170   GACUUGGGUUCGAAUCCUGGG   3190 Target Full Sequence	2.5	PREDICTED: Vitis vinifera MDIS1-interacting receptor like kinase 2-like (LOC100255980), mRNA	NA	coding protein	psRNATarget
KA173900.1	ncRNA:21   CAGAACUCAAGCUUAGGA-UCC   1   ||||||||||||||||||-||| targets:22   GUCUUGAGUUCGAAUCCUGAGG   43 Target Full Sequence	3.0	TSA: Vitis vinifera Locus_53373_Transcript_1/4_Confidence_0.133.Vivi mRNA sequence	NA	coding protein	psRNATarget