ncRNA ID | osa-miR1431 |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr1:4766320-4766559 [-] |
Reference genome | MSU7 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 36 - UUUGCGAGUUGGCCCGCUUGC - 56 |
Stem-loop(if miRNA) |
GGGAUUCAGAAAGGA   ACUUAGGGUUGCAAGCGGGUCAACCCGUGAACCCGCUUAUAGGCAAAAUUAGUAGGUAACCCGUAUAAAUGAGUUUAUGGAUCGACCCACUUGCAUCUCUAAGUGCG                AAG                                                                                                           G                |||                CGA                                                                                                           C ------------GUA   ACAAUUCUCGAUUCUGCCGUAGAUCCCUACGUUCGCCCGGUUGAGCGUUUGGAUGAAUAUACAUUUUAUUCACUAUUGGGCACACAAAAGUGCAGCACCAGGCUAAA |
Stem-loop sequence | GGGAUUCAGAAAGGAAAGACUUAGGGUUGCAAGCGGGUCAACCCGUGAACCCGCUUAUAGGCAAAAUUAGUAGGUAACCCGUAUAAAUGAGUUUAUGGAUCGACCCACUUGCAUCUCUAAGUGCGGCAAAUCGGACCACGACGUGAAAACACACGGGUUAUCACUUAUUUUACAUAUAAGUAGGUUUGCGAGUUGGCCCGCUUGCAUCCCUAGAUGCCGUCUUAGCUCUUAACAAGCAUG |
1 | PMID:18353984
"Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)"; Lu C, Jeong DH, Kulkarni K, Pillay M, Nobuta K, German R, Thatcher SR, Maher C, Zhang L, Ware D, Liu B, Cao X, Meyers BC, Green PJ; Proc Natl Acad Sci U S A. 105:4951-4956(2008). |
2 | PMID:18312648
"Identification of novel and candidate miRNAs in rice by high throughput sequencing"; Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK; BMC Plant Biol. 8:25(2008). |