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BaseInfo

ncRNA ID ath-miR170-3p
Species Arabidopsis thaliana
Class miRNA
Genome position chr5:26411580-26411672 [-]
Reference genome TAIR10
Source miRBase
Length 21
Mature sequence(if miRNA) 15 - UGAUUGAGCCGUGUCAAUAUC - 35
Stem-loop(if miRNA)         UC CUCU         C       C      UCUCUUU
CGAGAGAG  C    GAUAUUGGC UGGUUCA UCAGAU       U
||||||||  |    ||||||||| ||||||| ||||||
GCUCUCUC  G    CUAUAACUG GCCGAGU AGUCUA       A
        CU -ACU         U       U      CUCAAUC
Stem-loop sequence CGAGAGAGUCCCUCUGAUAUUGGCCUGGUUCACUCAGAUUCUCUUUUACUAACUCAUCUGAUUGAGCCGUGUCAAUAUCUCAGUCCUCUCUCG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AF036303.1
ncRNA:21   CUAUAACUGUGCCGAGUUAGU   1
  |||||||=|=|||||||||||
targets:135   GAUAUUGGCGCGGCUCAAUCA   155

2.5 Arabidopsis thaliana scarecrow-like 6 (SCL6) mRNA, partial cds NA coding protein psRNATarget
BX820692.1
ncRNA:21   CUAUAACUGUGCCGAGUUAGU   1
  |||||||=|=|||||||||||
targets:301   GAUAUUGGCGCGGCUCAAUCA   321

2.5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH60ZB03 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
AY133537.1
ncRNA:21   CUAUAACUGUGCCGAGUUAGU   1
  |||||||=|=|||||||||||
targets:675   GAUAUUGGCGCGGCUCAAUCA   695

2.5 Arabidopsis thaliana At4g00150/F6N15_20 mRNA, complete cds NA coding protein psRNATarget
BX826491.1
ncRNA:21   CUAUAACUGUGCCGAGUUAGU   1
  |||||||=|=|||||||||||
targets:661   GAUAUUGGCGCGGCUCAAUCA   681

2.5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB30ZC05 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
BX827001.1
ncRNA:21   CUAUAACUGUGCCGAGUUAGU   1
  |||||||=|=|||||||||||
targets:642   GAUAUUGGCGCGGCUCAAUCA   662

2.5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB85ZC09 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
BX826648.1
ncRNA:21   CUAUAACUGUGCCGAGUUAGU   1
  |||||||=|=|||||||||||
targets:737   GAUAUUGGCGCGGCUCAAUCA   757

2.5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB50ZC05 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
AY096372.1
ncRNA:21   CUAUAACUGUGCCGAGUUAGU   1
  |||||||=|=|||||||||||
targets:804   GAUAUUGGCGCGGCUCAAUCA   824

2.5 Arabidopsis thaliana putative scarecrow protein (At3g60630) mRNA, complete cds NA coding protein psRNATarget
BT053760.1
ncRNA:21   CUAUAACUGUGCCGAGUUAGU   1
  |||||||=|=|||||||||||
targets:885   GAUAUUGGCGCGGCUCAAUCA   905

2.5 Arabidopsis thaliana unknown protein (At2g45160) mRNA, complete cds NA coding protein psRNATarget
BT020591.1
ncRNA:21   CUAUAACUGUGCCGAGUUAGU   1
  |||||||=|=|||||||||||
targets:904   GAUAUUGGCGCGGCUCAAUCA   924

2.5 Arabidopsis thaliana At2g45160 gene, complete cds NA coding protein psRNATarget
AF462831.1
ncRNA:21   CUAUAACUGUGCCGAGUUAGU   1
  |||||||=|=|||||||||||
targets:758   GAUAUUGGCGCGGCUCAAUCA   778

2.5 Arabidopsis thaliana AT4g00150/F6N15_20 mRNA, complete cds NA coding protein psRNATarget
BX819093.1
ncRNA:21   CUAUAACUGUGCCGAGUUAGU   1
  |||||||=|=|||||||||||
targets:936   GAUAUUGGCGCGGCUCAAUCA   956

2.5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB45ZE06 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
AY064062.1
ncRNA:21   CUAUAACUGUGCCGAGUUAGU   1
  |||||||=|=|||||||||||
targets:946   GAUAUUGGCGCGGCUCAAUCA   966

2.5 Arabidopsis thaliana putative scarecrow protein (At3g60630) mRNA, complete cds NA coding protein psRNATarget
BX823015.1
ncRNA:21   CUAUAACUGUGCCGAGUUAGU   1
  |||||||=|=|||||||||||
targets:1044   GAUAUUGGCGCGGCUCAAUCA   1064

2.5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB80ZC11 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
BT004053.1
ncRNA:21   CUAUAACUGUGCCGAGUUAGU   1
  |||||||=|=|||||||||||
targets:1003   GAUAUUGGCGCGGCUCAAUCA   1023

2.5 Arabidopsis thaliana clone RAFL15-13-A09 (R20463) putative SCARECROW gene regulator (At2g45160) mRNA, complete cds NA coding protein psRNATarget
NM_116232.5
ncRNA:21   CUAUAACUGUGCCGAGUUAGU   1
  |||||||=|=|||||||||||
targets:1065   GAUAUUGGCGCGGCUCAAUCA   1085

2.5 Arabidopsis thaliana GRAS family transcription factor (HAM3), mRNA GRAS family transcription factor(HAM3) coding protein psRNATarget
NM_115927.5
ncRNA:21   CUAUAACUGUGCCGAGUUAGU   1
  |||||||=|=|||||||||||
targets:1100   GAUAUUGGCGCGGCUCAAUCA   1120

2.5 Arabidopsis thaliana GRAS family transcription factor (HAM2), mRNA GRAS family transcription factor(HAM2) coding protein psRNATarget
NM_130079.3
ncRNA:21   CUAUAACUGUGCCGAGUUAGU   1
  |||||||=|=|||||||||||
targets:1304   GAUAUUGGCGCGGCUCAAUCA   1324

2.5 Arabidopsis thaliana GRAS family transcription factor (HAM1), mRNA GRAS family transcription factor(HAM1) coding protein psRNATarget

Reference

1 PMID:12101121
"MicroRNAs in plants";
Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
Genes Dev. 16:1616-1626(2002).
2 PMID:12202040
"Prediction of plant microRNA targets";
Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP;
Cell. 110:513-520(2002).
3 PMID:16040653
"Expression of Arabidopsis MIRNA genes";
Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
Plant Physiol. 138:2145-2154(2005).
4 PMID:16954541
"MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant";
Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
Genome Res. 16:1276-1288(2006).
5 PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana";
Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
Genes Dev. 20:3407-3425(2006).
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