Search result

BaseInfo

ncRNA ID novel_vvi_miR933
Species Vitis vinifera
Class miRNA
Genome position Chr19:318234-318346 [-]
Reference genome 12X
Source SRR1048201
Length 24
Mature sequence(if miRNA) 90 - GUGUUUGGUAGGUGAUUUGAAAAG - 113
Stem-loop(if miRNA) --       GU  G    -         A   CC  CA                 AU
  GUGUUUG  AG UGAU UUGAAAAGU UUU  AG  UUUCUAAUAUUUGAAAA  A
  |||||||  || |||| ||||||||| |||  ||  |||||||||||||||||  A
  CACAAAC  UU ACUA GAUUUUUCA AAA  UC  AAAGAUUGUGAACUUUU  A
CA       UG  -    A         C   AA  AA                 AA
Stem-loop sequence GUGUUUGGUAGGUGAUUUGAAAAGUAUUUCCAGCAUUUCUAAUAUUUGAAAAAUAAAAAUUUUCAAGUGUUAGAAAAACUAAAAACACUUUUUAGAAUCAUUGUCAAACACAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
KA164008.1
ncRNA:24   GAAAAGUUUAGUGGAUGGUUUGUG   1
  |**||||*|||||||||||*||||
targets:739   CCCUUCAUAUCACCUACCACACAC   762

2.5 TSA: Vitis vinifera Locus_4710_Transcript_7/10_Confidence_0.091.Vivi mRNA sequence NA coding protein psRNATarget