ncRNA ID | novel_vvi_miR933 |
Species | Vitis vinifera |
Class | miRNA |
Genome position | Chr19:318234-318346 [-] |
Reference genome | 12X |
Source | SRR1048201 |
Length | 24 |
Mature sequence(if miRNA) | 90 - GUGUUUGGUAGGUGAUUUGAAAAG - 113 |
Stem-loop(if miRNA) |
--       GU  G    -         A   CC  CA                 AU   GUGUUUG  AG UGAU UUGAAAAGU UUU  AG  UUUCUAAUAUUUGAAAA  A   |||||||  || |||| ||||||||| |||  ||  |||||||||||||||||  A   CACAAAC  UU ACUA GAUUUUUCA AAA  UC  AAAGAUUGUGAACUUUU  A CA       UG  -    A         C   AA  AA                 AA |
Stem-loop sequence | GUGUUUGGUAGGUGAUUUGAAAAGUAUUUCCAGCAUUUCUAAUAUUUGAAAAAUAAAAAUUUUCAAGUGUUAGAAAAACUAAAAACACUUUUUAGAAUCAUUGUCAAACACAC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
KA164008.1 |
|
2.5 | TSA: Vitis vinifera Locus_4710_Transcript_7/10_Confidence_0.091.Vivi mRNA sequence | NA | coding protein | psRNATarget |