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BaseInfo

ncRNA ID novel_vvi_miR929
Species Vitis vinifera
Class miRNA
Genome position Chr18:5798947-5799026 [+]
Reference genome 12X
Source SRR1528363;SRR1528371;SRR1528374;SRR1528380;SRR1528381;SRR1528383;SRR1528391;SRR1528392;SRR1528404;SRR1528405;SRR1528408;SRR1528417
Length 24
Mature sequence(if miRNA) 1 - GUUAGAGGAGAGUGGAUGUAGGCC - 24
Stem-loop(if miRNA) ---GU   A      U          ---C     GCGCCGA
     UAG GGAGAG GGAUGUAGGC    GGGUU       A
     ||| |||||| ||||||||||    |||||
     AUC CUUCUC CUUACGUUUG    CUCAA       C
UUCUC   C      U          UAUU     AUAUCAC
Stem-loop sequence GUUAGAGGAGAGUGGAUGUAGGCCGGGUUGCGCCGAACCACUAUAAACUCUUAUGUUUGCAUUCUCUCUUCCCUACUCUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
KA157323.1
ncRNA:24   CCGGAUGUAGGUGAGAGGAGAUUG   1
  ||||||||||||||||||||||=|
targets:42   GGCCUACAUCCACUCUCCUCUAGC   65

1.5 TSA: Vitis vinifera Locus_23973_Transcript_1/1_Confidence_1.000.Vivi mRNA sequence NA coding protein psRNATarget