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BaseInfo

ncRNA ID novel_vvi_miR926
Species Vitis vinifera
Class miRNA
Genome position Chr16:839750-839988 [-]
Reference genome 12X
Source SRR1528363
Length 24
Mature sequence(if miRNA) 216 - GAGUAGUAGUGUUAUAGAAAGACU - 239
Stem-loop(if miRNA) --       A             A              U            A   GU                       CUU     A  C                    CAU - AU
  GAGUAGU GUGUUAUAGAAAG CUUAAUACAACUUA UCCACAGUGCAU AUU  AGAUAUUUCUUAUGCAAUACGUA   AGAAC CA CACAAAAGGUUUAAUACAAU   G C  U
  ||||||| ||||||||||||| |||||||||||||| |||||||||||| |||  |||||||||||||||||||||||   ||||| || ||||||||||||||||||||   | |
  UUCAUCA CACAGUAUCUUUC GAAUUAUGUUGAAU AGGUGUUACGUA UAA  UCUAUAAAGAAUGUGUUAUGUAU   UCUUG GU GUGUUUUCCAAAUUAUGUUG   C G  A
GA       A             C              C            C   AC                       AAU     A  U                    AAU A GU
Stem-loop sequence GAGUAGUAGUGUUAUAGAAAGACUUAAUACAACUUAUUCCACAGUGCAUAAUUGUAGAUAUUUCUUAUGCAAUACGUACUUAGAACACACCACAAAAGGUUUAAUACAAUCAUGCAUUAUGGACUAAGUUGUAUUAAACCUUUUGUGUUGAGUUCUUAAUAUGUAUUGUGUAAGAAAUAUCUCAAAUCAUGCAUUGUGGACUAAGUUGUAUUAAGCCUUUCUAUGACACAACUACUUAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_002270934.3
ncRNA:24   UCAGAAAGAUAUUGUGAUGAUGAG   1
  **|=||||||||*|||||||||||
targets:658   CUUUUUUCUAUACCACUACUACUC   681

1.5 PREDICTED: Vitis vinifera non-specific lipid-transfer protein P5 (LOC100261985), mRNA NA coding protein psRNATarget