ncRNA ID | novel_vvi_miR926 |
Species | Vitis vinifera |
Class | miRNA |
Genome position | Chr16:839750-839988 [-] |
Reference genome | 12X |
Source | SRR1528363 |
Length | 24 |
Mature sequence(if miRNA) | 216 - GAGUAGUAGUGUUAUAGAAAGACU - 239 |
Stem-loop(if miRNA) |
--       A             A              U            A   GU                       CUU     A  C                    CAU - AU   GAGUAGU GUGUUAUAGAAAG CUUAAUACAACUUA UCCACAGUGCAU AUU  AGAUAUUUCUUAUGCAAUACGUA   AGAAC CA CACAAAAGGUUUAAUACAAU   G C  U   ||||||| ||||||||||||| |||||||||||||| |||||||||||| |||  |||||||||||||||||||||||   ||||| || ||||||||||||||||||||   | |   UUCAUCA CACAGUAUCUUUC GAAUUAUGUUGAAU AGGUGUUACGUA UAA  UCUAUAAAGAAUGUGUUAUGUAU   UCUUG GU GUGUUUUCCAAAUUAUGUUG   C G  A GA       A             C              C            C   AC                       AAU     A  U                    AAU A GU |
Stem-loop sequence | GAGUAGUAGUGUUAUAGAAAGACUUAAUACAACUUAUUCCACAGUGCAUAAUUGUAGAUAUUUCUUAUGCAAUACGUACUUAGAACACACCACAAAAGGUUUAAUACAAUCAUGCAUUAUGGACUAAGUUGUAUUAAACCUUUUGUGUUGAGUUCUUAAUAUGUAUUGUGUAAGAAAUAUCUCAAAUCAUGCAUUGUGGACUAAGUUGUAUUAAGCCUUUCUAUGACACAACUACUUAG |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_002270934.3 |
|
1.5 | PREDICTED: Vitis vinifera non-specific lipid-transfer protein P5 (LOC100261985), mRNA | NA | coding protein | psRNATarget |