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BaseInfo

ncRNA ID osa-miR156c-3p
Species Oryza sativa
Class miRNA
Genome position Chr1:4665975-4666123 [+]
Reference genome MSU7
Source miRBase
Length 22
Mature sequence(if miRNA) 100 - GCUCACUUCUCUCUCUGUCAGC - 121
Stem-loop(if miRNA)             GG U       G ---          -     -               GACU   UU     CU AA
GGAGGAAGAGAG  G GAGAGGU A   GGCUGACAGA AGAGA GUGAGCACACAUGGU    UUC  GCAUG  G  U
||||||||||||  | ||||||| |   |||||||||| ||||| |||||||||||||||    |||  |||||  |
CCUCUUUCUCUC  U CUCUCUA U   CCGACUGUCU UCUCU CACUCGUGUGUAUCG    AAG  CGUAC  C  G
            UU -       G UUA          C     U               ----   UU     -U AG
Stem-loop sequence GGAGGAAGAGAGGGGUGAGAGGUGAGGCUGACAGAAGAGAGUGAGCACACAUGGUGACUUUCUUGCAUGCUGAAUGGACUCAUGCUUGAAGCUAUGUGUGCUCACUUCUCUCUCUGUCAGCCAUUUGAUCUCUCUUUCUCUCUUUCUCC

Reference

1 PMID:12101121
"MicroRNAs in plants";
Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
Genes Dev. 16:1616-1626(2002).
2 PMID:21901091
"Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors";
Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
PLoS Pathog. 7:e1002176(2011).