ncRNA ID | osa-miR156c-3p |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr1:4665975-4666123 [+] |
Reference genome | MSU7 |
Source | miRBase |
Length | 22 |
Mature sequence(if miRNA) | 100 - GCUCACUUCUCUCUCUGUCAGC - 121 |
Stem-loop(if miRNA) |
            GG U       G ---          -     -               GACU   UU     CU AA GGAGGAAGAGAG  G GAGAGGU A   GGCUGACAGA AGAGA GUGAGCACACAUGGU    UUC  GCAUG  G  U ||||||||||||  | ||||||| |   |||||||||| ||||| |||||||||||||||    |||  |||||  | CCUCUUUCUCUC  U CUCUCUA U   CCGACUGUCU UCUCU CACUCGUGUGUAUCG    AAG  CGUAC  C  G             UU -       G UUA          C     U               ----   UU     -U AG |
Stem-loop sequence | GGAGGAAGAGAGGGGUGAGAGGUGAGGCUGACAGAAGAGAGUGAGCACACAUGGUGACUUUCUUGCAUGCUGAAUGGACUCAUGCUUGAAGCUAUGUGUGCUCACUUCUCUCUCUGUCAGCCAUUUGAUCUCUCUUUCUCUCUUUCUCC |
1 | PMID:12101121
"MicroRNAs in plants"; Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP; Genes Dev. 16:1616-1626(2002). |
2 | PMID:21901091
"Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors"; Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y; PLoS Pathog. 7:e1002176(2011). |