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BaseInfo

ncRNA ID	osa-miR156c-5p
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:4665975-4666123 [+]
Reference genome	MSU7
Source	miRBase
Length	20
Mature sequence(if miRNA)	29 - UGACAGAAGAGAGUGAGCAC - 48
Stem-loop(if miRNA)	GG U       G ---          -     -               GACU   UU     CU AA GGAGGAAGAGAG  G GAGAGGU A   GGCUGACAGA AGAGA GUGAGCACACAUGGU    UUC  GCAUG  G  U ||||||||||||  | ||||||| |   |||||||||| ||||| |||||||||||||||    |||  |||||  | CCUCUUUCUCUC  U CUCUCUA U   CCGACUGUCU UCUCU CACUCGUGUGUAUCG    AAG  CGUAC  C  G             UU -       G UUA          C     U               ----   UU     -U AG
Stem-loop sequence	GGAGGAAGAGAGGGGUGAGAGGUGAGGCUGACAGAAGAGAGUGAGCACACAUGGUGACUUUCUUGCAUGCUGAAUGGACUCAUGCUUGAAGCUAUGUGUGCUCACUUCUCUCUCUGUCAGCCAUUUGAUCUCUCUUUCUCUCUUUCUCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK110797.1	ncRNA:20   CACGAGUGAGAGA-AGACAGU   1   |||||||||||||-||||||| targets:663   GUGCUCACUCUCUAUCUGUCA   683 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:002-171-D11, full insert sequence	NA	coding protein	psRNATarget
JC611924.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:98   GUGCUCUCUCUCUUCUGUCA   117 Target Full Sequence	1.0	Sequence 86 from Patent WO2014106838	NA	coding protein	psRNATarget
AK063561.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:675   GUGCUCUCUCUCUUCUGUCA   694 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:001-117-F03, full insert sequence	NA	coding protein	psRNATarget
AK062581.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:620   GUGCUCUCUCUCUUCUGUCA   639 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:001-100-B10, full insert sequence	NA	coding protein	psRNATarget
XM_015767590.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:848   GUGCUCUCUCUCUUCUGUCA   867 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group squamosa promoter-binding-like protein 4 (LOC4328461), transcript variant X2, mRNA	squamosa promoter-binding-like protein 4(LOC4328461)	coding protein	psRNATarget
XM_015767589.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:866   GUGCUCUCUCUCUUCUGUCA   885 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group squamosa promoter-binding-like protein 4 (LOC4328461), transcript variant X1, mRNA	squamosa promoter-binding-like protein 4(LOC4328461)	coding protein	psRNATarget
XM_015786013.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:849   GUGCUCUCUCUCUUCUGUCA   868 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group squamosa promoter-binding-like protein 11 (LOC107276066), mRNA	squamosa promoter-binding-like protein 11(LOC107276066)	coding protein	psRNATarget
XM_015779858.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:818   GUGCUCUCUCUCUUCUGUCA   837 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group squamosa promoter-binding-like protein 7 (LOC4336597), mRNA	squamosa promoter-binding-like protein 7(LOC4336597)	coding protein	psRNATarget
AK068749.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:821   GUGCUCUCUCUCUUCUGUCA   840 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J013158C23, full insert sequence	NA	coding protein	psRNATarget
AK066057.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:981   GUGCUCUCUCUCUUCUGUCA   1000 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J013053E16, full insert sequence	NA	coding protein	psRNATarget
AK061641.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1085   GUGCUCUCUCUCUUCUGUCA   1104 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:001-036-B03, full insert sequence	NA	coding protein	psRNATarget
XM_015762464.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1112   GUGCUCUCUCUCUUCUGUCA   1131 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group putative squamosa promoter-binding-like protein 19 (LOC107276349), mRNA	putative squamosa promoter-binding-like protein 19(LOC107276349)	coding protein	psRNATarget
XM_015767591.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:986   GUGCUCUCUCUCUUCUGUCA   1005 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group squamosa promoter-binding-like protein 4 (LOC4328461), transcript variant X3, mRNA	squamosa promoter-binding-like protein 4(LOC4328461)	coding protein	psRNATarget
AK107191.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:992   GUGCUCUCUCUCUUCUGUCA   1011 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:002-125-A04, full insert sequence	NA	coding protein	psRNATarget
AK109469.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1054   GUGCUCUCUCUCUUCUGUCA   1073 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:001-128-D02, full insert sequence	NA	coding protein	psRNATarget
XM_015755872.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1049   GUGCUCUCUCUCUUCUGUCA   1068 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group squamosa promoter-binding-like protein 2 (LOC4327245), mRNA	squamosa promoter-binding-like protein 2(LOC4327245)	coding protein	psRNATarget
XM_015795327.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1105   GUGCUCUCUCUCUUCUGUCA   1124 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group squamosa promoter-binding-like protein 14 (LOC4345998), mRNA	squamosa promoter-binding-like protein 14(LOC4345998)	coding protein	psRNATarget
XM_015787969.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1488   GUGCUCUCUCUCUUCUGUCA   1507 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group squamosa promoter-binding-like protein 12 (LOC4341986), transcript variant X8, mRNA	squamosa promoter-binding-like protein 12(LOC4341986)	coding protein	psRNATarget
XM_015755476.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1433   GUGCUCUCUCUCUUCUGUCA   1452 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group squamosa promoter-binding-like protein 17 (LOC9266075), transcript variant X2, mRNA	squamosa promoter-binding-like protein 17(LOC9266075)	coding protein	psRNATarget
XM_015755475.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1436   GUGCUCUCUCUCUUCUGUCA   1455 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group squamosa promoter-binding-like protein 17 (LOC9266075), transcript variant X1, mRNA	squamosa promoter-binding-like protein 17(LOC9266075)	coding protein	psRNATarget
XM_015793891.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1506   GUGCUCUCUCUCUUCUGUCA   1525 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group squamosa promoter-binding-like protein 16 (LOC4346133), mRNA	squamosa promoter-binding-like protein 16(LOC4346133)	coding protein	psRNATarget
AK102136.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1688   GUGCUCUCUCUCUUCUGUCA   1707 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J033085H14, full insert sequence	NA	coding protein	psRNATarget
XM_015755388.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1709   GUGCUCUCUCUCUUCUGUCA   1728 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group squamosa promoter-binding-like protein 18 (LOC4347516), transcript variant X2, mRNA	squamosa promoter-binding-like protein 18(LOC4347516)	coding protein	psRNATarget
XM_015755387.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1727   GUGCUCUCUCUCUUCUGUCA   1746 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group squamosa promoter-binding-like protein 18 (LOC4347516), transcript variant X1, mRNA	squamosa promoter-binding-like protein 18(LOC4347516)	coding protein	psRNATarget
XM_015787976.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1906   GUGCUCUCUCUCUUCUGUCA   1925 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group squamosa promoter-binding-like protein 12 (LOC4341986), transcript variant X14, mRNA	squamosa promoter-binding-like protein 12(LOC4341986)	coding protein	psRNATarget
XM_015787971.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1949   GUGCUCUCUCUCUUCUGUCA   1968 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group squamosa promoter-binding-like protein 12 (LOC4341986), transcript variant X10, mRNA	squamosa promoter-binding-like protein 12(LOC4341986)	coding protein	psRNATarget
AK073179.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:2019   GUGCUCUCUCUCUUCUGUCA   2038 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J033004F21, full insert sequence	NA	coding protein	psRNATarget
XM_015787967.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1973   GUGCUCUCUCUCUUCUGUCA   1992 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group squamosa promoter-binding-like protein 12 (LOC4341986), transcript variant X6, mRNA	squamosa promoter-binding-like protein 12(LOC4341986)	coding protein	psRNATarget
XM_015787973.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1987   GUGCUCUCUCUCUUCUGUCA   2006 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group squamosa promoter-binding-like protein 12 (LOC4341986), transcript variant X12, mRNA	squamosa promoter-binding-like protein 12(LOC4341986)	coding protein	psRNATarget
XM_015787963.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:2013   GUGCUCUCUCUCUUCUGUCA   2032 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group squamosa promoter-binding-like protein 12 (LOC4341986), transcript variant X2, mRNA	squamosa promoter-binding-like protein 12(LOC4341986)	coding protein	psRNATarget
XM_015787964.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:2054   GUGCUCUCUCUCUUCUGUCA   2073 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group squamosa promoter-binding-like protein 12 (LOC4341986), transcript variant X3, mRNA	squamosa promoter-binding-like protein 12(LOC4341986)	coding protein	psRNATarget
XM_015787962.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:2162   GUGCUCUCUCUCUUCUGUCA   2181 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group squamosa promoter-binding-like protein 12 (LOC4341986), transcript variant X1, mRNA	squamosa promoter-binding-like protein 12(LOC4341986)	coding protein	psRNATarget
XM_015787965.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:2239   GUGCUCUCUCUCUUCUGUCA   2258 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group squamosa promoter-binding-like protein 12 (LOC4341986), transcript variant X4, mRNA	squamosa promoter-binding-like protein 12(LOC4341986)	coding protein	psRNATarget
AK068702.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:2222   GUGCUCUCUCUCUUCUGUCA   2241 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J013159I15, full insert sequence	NA	coding protein	psRNATarget
XM_015787975.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:3330   GUGCUCUCUCUCUUCUGUCA   3349 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group squamosa promoter-binding-like protein 12 (LOC4341986), transcript variant X13, mRNA	squamosa promoter-binding-like protein 12(LOC4341986)	coding protein	psRNATarget
XM_015787970.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:3374   GUGCUCUCUCUCUUCUGUCA   3393 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group squamosa promoter-binding-like protein 12 (LOC4341986), transcript variant X9, mRNA	squamosa promoter-binding-like protein 12(LOC4341986)	coding protein	psRNATarget
XM_015787972.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:3411   GUGCUCUCUCUCUUCUGUCA   3430 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group squamosa promoter-binding-like protein 12 (LOC4341986), transcript variant X11, mRNA	squamosa promoter-binding-like protein 12(LOC4341986)	coding protein	psRNATarget
XM_015787968.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:3455   GUGCUCUCUCUCUUCUGUCA   3474 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group squamosa promoter-binding-like protein 12 (LOC4341986), transcript variant X7, mRNA	squamosa promoter-binding-like protein 12(LOC4341986)	coding protein	psRNATarget
XM_015787966.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:3502   GUGCUCUCUCUCUUCUGUCA   3521 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group squamosa promoter-binding-like protein 12 (LOC4341986), transcript variant X5, mRNA	squamosa promoter-binding-like protein 12(LOC4341986)	coding protein	psRNATarget
XM_015789929.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   *|||||*||||||||||||| targets:849   AUGCUCCCUCUCUUCUGUCA   868 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group squamosa promoter-binding-like protein 13 (LOC9270355), mRNA	squamosa promoter-binding-like protein 13(LOC9270355)	coding protein	psRNATarget
KT899582.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   *|||||*||||||||||||| targets:883   AUGCUCCCUCUCUUCUGUCA   902 Target Full Sequence	1.0	Oryza sativa Japonica Group isolate GP7 GLW7 (GLW7) mRNA, complete cds	NA	coding protein	psRNATarget
KT899581.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   *|||||*||||||||||||| targets:895   AUGCUCCCUCUCUUCUGUCA   914 Target Full Sequence	1.0	Oryza sativa Japonica Group isolate Dongjing GLW7 (GLW7) mRNA, complete cds	NA	coding protein	psRNATarget
XM_015771398.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   *|||||*||||||||||||| targets:1770   AUGCUCUCUCUCUUCUGUCA   1789 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group squamosa promoter-binding-like protein 3 (LOC9270639), transcript variant X7, mRNA	squamosa promoter-binding-like protein 3(LOC9270639)	coding protein	psRNATarget
AK242984.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   *|||||*||||||||||||| targets:1873   AUGCUCUCUCUCUUCUGUCA   1892 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090094N03, full insert sequence	NA	coding protein	psRNATarget
XM_015771395.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   *|||||*||||||||||||| targets:1849   AUGCUCUCUCUCUUCUGUCA   1868 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group squamosa promoter-binding-like protein 3 (LOC9270639), transcript variant X4, mRNA	squamosa promoter-binding-like protein 3(LOC9270639)	coding protein	psRNATarget
XM_015771397.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   *|||||*||||||||||||| targets:1872   AUGCUCUCUCUCUUCUGUCA   1891 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group squamosa promoter-binding-like protein 3 (LOC9270639), transcript variant X6, mRNA	squamosa promoter-binding-like protein 3(LOC9270639)	coding protein	psRNATarget
XM_015771400.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   *|||||*||||||||||||| targets:1935   AUGCUCUCUCUCUUCUGUCA   1954 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group squamosa promoter-binding-like protein 3 (LOC9270639), transcript variant X9, mRNA	squamosa promoter-binding-like protein 3(LOC9270639)	coding protein	psRNATarget
XM_015771399.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   *|||||*||||||||||||| targets:1965   AUGCUCUCUCUCUUCUGUCA   1984 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group squamosa promoter-binding-like protein 3 (LOC9270639), transcript variant X8, mRNA	squamosa promoter-binding-like protein 3(LOC9270639)	coding protein	psRNATarget
XM_015771392.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   *|||||*||||||||||||| targets:1967   AUGCUCUCUCUCUUCUGUCA   1986 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group squamosa promoter-binding-like protein 3 (LOC9270639), transcript variant X1, mRNA	squamosa promoter-binding-like protein 3(LOC9270639)	coding protein	psRNATarget
XM_015771396.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   *|||||*||||||||||||| targets:2211   AUGCUCUCUCUCUUCUGUCA   2230 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group squamosa promoter-binding-like protein 3 (LOC9270639), transcript variant X5, mRNA	squamosa promoter-binding-like protein 3(LOC9270639)	coding protein	psRNATarget
XM_015771394.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   *|||||*||||||||||||| targets:2289   AUGCUCUCUCUCUUCUGUCA   2308 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group squamosa promoter-binding-like protein 3 (LOC9270639), transcript variant X3, mRNA	squamosa promoter-binding-like protein 3(LOC9270639)	coding protein	psRNATarget
XM_015771393.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   *|||||*||||||||||||| targets:2299   AUGCUCUCUCUCUUCUGUCA   2318 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group squamosa promoter-binding-like protein 3 (LOC9270639), transcript variant X2, mRNA	squamosa promoter-binding-like protein 3(LOC9270639)	coding protein	psRNATarget
AK288067.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   *|||||*||||||||||||| targets:623   AUGCUCCCUCUCUUCUGUCA   642 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J075157G03, full insert sequence	NA	coding protein	psRNATarget

Reference

1	PMID:12101121 "MicroRNAs in plants"; Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP; Genes Dev. 16:1616-1626(2002).
2	PMID:21901091 "Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors"; Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y; PLoS Pathog. 7:e1002176(2011).