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BaseInfo

ncRNA ID	novel_vvi_miR884
Species	Vitis vinifera
Class	miRNA
Genome position	Chr3:18342296-18342406 [-]
Reference genome	12X
Source	SRR1528361
Length	24
Mature sequence(if miRNA)	88 - UGUUUGAUAGUGAUUUUAGGAAAC - 111
Stem-loop(if miRNA)	--U     A               ACGCUUU   C                UGAU    GUUUG UAGUGAUUUUAGGAA       UAA AUUUUUAAUACUUGAA    A    ||||| |||||||||||||||       ||| ||||||||||||||||    A    UAAAC AUCAUUAAAAUCCUU       AUU UAAAGAUUGUGGACUU    A GGG     C               CACAAAU   A                UUAA
Stem-loop sequence	UGUUUGAUAGUGAUUUUAGGAAACGCUUUUAACAUUUUUAAUACUUGAAUGAUAAAAAUUUUCAGGUGUUAGAAAUAUUAUAAACACUUCCUAAAAUUACUACCAAAUGGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
KA168752.1	ncRNA:24   CAAAGGAUUUUAGUGAUAGUUUGU   1   ||||=||||||||||||||||||| targets:1239   GUUUUCUAAAAUCACUAUCAAACA   1262 Target Full Sequence	0.0	TSA: Vitis vinifera Locus_612_Transcript_1/10_Confidence_0.462.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA141295.1	ncRNA:24   CAAAGGAUUUUAGUGAUAGUUUGU   1   **|||||||||||||||||||||| targets:671   ACUUCCUAAAAUCACUAUCAAACA   694 Target Full Sequence	0.0	TSA: Vitis vinifera Locus_7662_Transcript_5/10_Confidence_0.136.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA146990.1	ncRNA:24   CAAAGGAUUUUAGUGAUAGUUUGU   1   **|||||||||||||||||||||| targets:3470   ACUUCCUAAAAUCACUAUCAAACA   3493 Target Full Sequence	0.0	TSA: Vitis vinifera Locus_5272_Transcript_7/11_Confidence_0.333.Vivi mRNA sequence	NA	coding protein	psRNATarget
XM_019216909.1	ncRNA:24   CAAAGGAUUUUAGUGAUAGUUUGU   1   *|||||||=||||||||||||||| targets:832   AUUUCCUAGAAUCACUAUCAAACA   855 Target Full Sequence	1.0	PREDICTED: Vitis vinifera peptidyl-prolyl cis-trans isomerase FKBP16-1, chloroplastic (LOC100261657), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_002267790.3	ncRNA:24   CAAAGGAUUUUAGUGAUAGUUUGU   1   *|||||||=||||||||||||||| targets:860   AUUUCCUAGAAUCACUAUCAAACA   883 Target Full Sequence	1.0	PREDICTED: Vitis vinifera peptidyl-prolyl cis-trans isomerase FKBP16-1, chloroplastic (LOC100261657), transcript variant X1, mRNA	NA	coding protein	psRNATarget
KA165410.1	ncRNA:24   CAAAGGAUUUUAGUGAUAGUUUGU   1   *||||||*|||||||||||||||| targets:70   AUUUCCUUAAAUCACUAUCAAACA   93 Target Full Sequence	1.0	TSA: Vitis vinifera Locus_18857_Transcript_3/9_Confidence_0.188.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA165411.1	ncRNA:24   CAAAGGAUUUUAGUGAUAGUUUGU   1   *||||||*|||||||||||||||| targets:70   AUUUCCUUAAAUCACUAUCAAACA   93 Target Full Sequence	1.0	TSA: Vitis vinifera Locus_18857_Transcript_7/9_Confidence_0.250.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA161813.1	ncRNA:24   CAAAGGAUUUUAGUGAUAGUUUGU   1   |**|==|||||||||||||||||| targets:662   GGAUUUUAAAAUCACUAUCAAACA   685 Target Full Sequence	1.0	TSA: Vitis vinifera Locus_13636_Transcript_8/8_Confidence_0.560.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA166591.1	ncRNA:24   CAAAGGAUUUUAGUGAUAGUUUGU   1   |*||||||||||||||=||||||| targets:888   GCUUCCUAAAAUCACUGUCAAACA   911 Target Full Sequence	1.5	TSA: Vitis vinifera Locus_1103_Transcript_2/9_Confidence_0.406.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA151211.1	ncRNA:24   CAAAGGAUUUUAGUGAUAGUUUGU   1   |||*=||||||||||*|||||||| targets:126   GUUCUCUAAAAUCACAAUCAAACA   149 Target Full Sequence	1.5	TSA: Vitis vinifera Locus_9870_Transcript_4/7_Confidence_0.708.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA166769.1	ncRNA:24   CAAAGGAUUUUAGUGAUAGUUUGU   1   **||||||=|=||||||||||||| targets:4672   ACUUCCUAGAGUCACUAUCAAACA   4695 Target Full Sequence	2.0	TSA: Vitis vinifera Locus_5976_Transcript_9/10_Confidence_0.484.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA170970.1	ncRNA:24   CAAAGGAUUUUAGUGAUAGUUUGU   1   **||||||=|||||||||||||=| targets:241   ACUUCCUAGAAUCACUAUCAAAUA   264 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_17927_Transcript_6/6_Confidence_0.500.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA170969.1	ncRNA:24   CAAAGGAUUUUAGUGAUAGUUUGU   1   **||||||=|||||||||||||=| targets:241   ACUUCCUAGAAUCACUAUCAAAUA   264 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_17927_Transcript_3/6_Confidence_0.611.Vivi mRNA sequence	NA	coding protein	psRNATarget
XM_002282149.3	ncRNA:24   CAAAGGAUUUUAGUGAUAGUUUGU   1   **||==||||||||||||||||=| targets:1722   CCUUUUUAAAAUCACUAUCAAAUA   1745 Target Full Sequence	2.5	PREDICTED: Vitis vinifera cytochrome P450 86B1 (LOC100250807), mRNA	NA	coding protein	psRNATarget
KA171163.1	ncRNA:24   CAAAGGAUUUUAGUGAUAGUUUGU   1   *|||=*||||||||||=||||||| targets:995   AUUUUGUAAAAUCACUGUCAAACA   1018 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_6292_Transcript_2/4_Confidence_0.636.Vivi mRNA sequence	NA	coding protein	psRNATarget