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BaseInfo

ncRNA ID	novel_vvi_miR880
Species	Vitis vinifera
Class	miRNA
Genome position	Chr2:10753764-10753986 [-]
Reference genome	12X
Source	SRR1528361
Length	22
Mature sequence(if miRNA)	202 - GAUGGUGUUUGUUUUUUGGCUG - 223
Stem-loop(if miRNA)	--GA                                           GC            GU      C   AUA        A                     CUA   A     UGGUGUUUGUUUUUUGGCUGAAUAGAAAAAACCAAAAUAUUUG  UUUUUCUAUUCA  UAAAAG AAC   UUGACAUC UCUAACAUAACUAAAGUGAAC   UUG U     |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||  |||||| |||   |||||||| |||||||||||||||||||||   |||     ACCACAAACAAAAAACCGACUUAUCUUUUUUGGUUUUAUAAAC  AAAAAGAUAAGU  AUUUUC UUG   AACUGUAG AGAUUGUAUUGAUUUCACUUG   AAC A GUCC                                           UA            UG      A   GAC        C                     ---   A
Stem-loop sequence	GAUGGUGUUUGUUUUUUGGCUGAAUAGAAAAAACCAAAAUAUUUGGCUUUUUCUAUUCAGUUAAAAGCAACAUAUUGACAUCAUCUAACAUAACUAAAGUGAACCUAUUGAUAACAAGUUCACUUUAGUUAUGUUAGACGAUGUCAACAGGUUACUUUUAGUUGAAUAGAAAAAAUCAAAUAUUUUGGUUUUUUCUAUUCAGCCAAAAAACAAACACCACCUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
KA172889.1	ncRNA:22   GUCGGUUUUUUGUUUGUGGUAG   1   =|||||||||||||||||||*| targets:3984   UAGCCAAAAAACAAACACCACC   4005 Target Full Sequence	1.5	TSA: Vitis vinifera Locus_787_Transcript_4/6_Confidence_0.529.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA159632.1	ncRNA:22   GUCGGUUUUUUGUUUGUGGUAG   1   *|*|||||||||||*||||||| targets:196   AACCCAAAAAACAACCACCAUC   217 Target Full Sequence	1.5	TSA: Vitis vinifera Locus_8816_Transcript_1/5_Confidence_0.308.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA159633.1	ncRNA:22   GUCGGUUUUUUGUUUGUGGUAG   1   *|*|||||||||||*||||||| targets:196   AACCCAAAAAACAACCACCAUC   217 Target Full Sequence	1.5	TSA: Vitis vinifera Locus_8816_Transcript_3/5_Confidence_0.385.Vivi mRNA sequence	NA	coding protein	psRNATarget
FQ381995.1	ncRNA:22   GUCGGUUUUUUGUUUGUGGUAG   1   *|*|||||||||||*||||||| targets:158   AACCCAAAAAACAACCACCAUC   179 Target Full Sequence	1.5	Vitis vinifera clone SS0ABG76YD01	NA	coding protein	psRNATarget
XM_002283324.4	ncRNA:22   GUCGGUUUUUUGUUUGUGGUAG   1   *|*|||||||||||*||||||| targets:210   AACCCAAAAAACAACCACCAUC   231 Target Full Sequence	1.5	PREDICTED: Vitis vinifera probable folate-biopterin transporter 6 (LOC100244119), mRNA	NA	coding protein	psRNATarget
XM_002275318.4	ncRNA:22   GUCGGUUUUUUGUUUGUGGUAG   1   |||=|||||||||||||=|||| targets:2105   CAGUCAAAAAACAAACAUCAUC   2126 Target Full Sequence	2.5	PREDICTED: Vitis vinifera tRNA pseudouridine synthase A (LOC100242086), mRNA	NA	coding protein	psRNATarget
XM_002275318.4	ncRNA:22   GUCGGUUUUUUGUUUGUGGUAG   1   |||||||||||||||||||*|= targets:2034   CAGCCAAAAAACAAACACCUUU   2055 Target Full Sequence	2.5	PREDICTED: Vitis vinifera tRNA pseudouridine synthase A (LOC100242086), mRNA	NA	coding protein	psRNATarget
XM_010655071.2	ncRNA:22   GUCGGUUUUUUGUUUGUGGUAG   1   =**=|=|=|||||||||||||| targets:334   UUCUCGAGAAACAAACACCAUC   355 Target Full Sequence	3.0	PREDICTED: Vitis vinifera protein SCAR2 (LOC100251663), mRNA	NA	coding protein	psRNATarget