| ncRNA ID | osa-miR5521 |
| Species | Oryza sativa |
| Class | miRNA |
| Genome position | Chr1:2334077-2334260 [-] |
| Reference genome | MSU7 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 154 - AGUGGCUGCAUAUCUGAUGAG - 174 |
| Stem-loop(if miRNA) |
A A - G --CA UC C - UAAAAUCCUU -- AACUGUUCUGCUUCCGUGCCUCUCACAGCGCUGGUUCCAGU UGA UGUUCAG U GCUG UA UGAUGAG CACG G GAGC A G ||| ||||||| | |||| || ||||||| |||| | |||| | C GCU ACGAGUU A UGAC GU ACUGCUC AGAG A GGUC U A A G G G UAGG UU - A ---------- GA AUAUCUGCUAAAUACACAACAAGGAGAUGUAGACUUAGUAU |
| Stem-loop sequence | AUGAAUGUUCAGUGGCUGCAUAUCUGAUGAGCCACGGUAAAAUCCUUGAGCAAACUGUUCUGCUUCCGUGCCUCUCACAGCGCUGGUUCCAGUGCAUAUGAUUCAGAUGUAGAGGAACAACACAUAAAUCGUCUAUAUAGCUGGAAGAGACUCGUCAUUUGGGAUCAGUGAGUUGAGCAGUCGA |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AK288054.1 |
|
0.0 | Oryza sativa Japonica Group cDNA, clone: J075152E14, full insert sequence | NA | coding protein | psRNATarget | |||||||||
| AK110828.1 |
|
2.5 | Oryza sativa Japonica Group cDNA clone:002-171-H11, full insert sequence | NA | coding protein | psRNATarget | |||||||||
| XM_015784629.1 |
|
2.5 | PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4324340 (LOC4324340), mRNA | uncharacterized LOC4324340(LOC4324340) | coding protein | psRNATarget | |||||||||
| AK100384.1 |
|
3.0 | Oryza sativa Japonica Group cDNA clone:J023085H13, full insert sequence | NA | coding protein | psRNATarget |
| 1 | PMID:21679406
"Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa"; Wei LQ, Yan LF, Wang T; Genome Biol. 12:R53(2011). |