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BaseInfo

ncRNA ID osa-miR5494
Species Oryza sativa
Class miRNA
Genome position Chr1:2317278-2317395 [-]
Reference genome MSU7
Source miRBase
Length 21
Mature sequence(if miRNA) 88 - UUAUAGGAGGUAUAGACGGUA - 108
Stem-loop(if miRNA) A         --------     -G          C  UA  CACG   CU     UU   CUAA
 UUUGUUUCU        UUAUA  GAGGUAUAGA GG  GC    UCA  UUCUU  UGC    U
 |||||||||        |||||  |||||||||| ||  ||    |||  |||||  |||
 GAACAAAGA        AGUAU  UUCUAUGUCU UC  CG    AGU  AAGAG  ACG    C
A         UACGCUAC     AG          C  CC  ---A   -C     -C   UACC
Stem-loop sequence AUUUGUUUCUUUAUAGGAGGUAUAGACGGUAGCCACGUCACUUUCUUUUUGCCUAAUCCCAUGCACGAGAACUGAAGCCCCUCUCUGUAUCUUGAUAUGACAUCGCAUAGAAACAAGA

Reference

1 PMID:21679406
"Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa";
Wei LQ, Yan LF, Wang T;
Genome Biol. 12:R53(2011).