ncRNA ID | osa-miR5494 |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr1:2317278-2317395 [-] |
Reference genome | MSU7 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 88 - UUAUAGGAGGUAUAGACGGUA - 108 |
Stem-loop(if miRNA) |
A         --------     -G          C  UA  CACG   CU     UU   CUAA  UUUGUUUCU        UUAUA  GAGGUAUAGA GG  GC    UCA  UUCUU  UGC    U  |||||||||        |||||  |||||||||| ||  ||    |||  |||||  |||  GAACAAAGA        AGUAU  UUCUAUGUCU UC  CG    AGU  AAGAG  ACG    C A         UACGCUAC     AG          C  CC  ---A   -C     -C   UACC |
Stem-loop sequence | AUUUGUUUCUUUAUAGGAGGUAUAGACGGUAGCCACGUCACUUUCUUUUUGCCUAAUCCCAUGCACGAGAACUGAAGCCCCUCUCUGUAUCUUGAUAUGACAUCGCAUAGAAACAAGA |
1 | PMID:21679406
"Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa"; Wei LQ, Yan LF, Wang T; Genome Biol. 12:R53(2011). |