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BaseInfo

ncRNA ID novel_vvi_miR859
Species Vitis vinifera
Class miRNA
Genome position Chr16:4950999-4951101 [+]
Reference genome 12X
Source SRR1528361;SRR2029783;SRR2029784
Length 23
Mature sequence(if miRNA) 81 - AGGGAAGUUGGGUUUGUUUUGGG - 103
Stem-loop(if miRNA) --            C                             AGACACCCA  A
  CAAAACAAACCC ACUUCCCUUCCCCAUGGCUCUGAUACCAU         GG C
  |||||||||||| |||||||||||||||||||||||||||||         ||
  GUUUUGUUUGGG UGAAGGGAAGGGGUACCGAGACUAUGGUA         CC A
GG            U                             ---------  C
Stem-loop sequence CAAAACAAACCCCACUUCCCUUCCCCAUGGCUCUGAUACCAUAGACACCCAGGACACCCAUGGUAUCAGAGCCAUGGGGAAGGGAAGUUGGGUUUGUUUUGGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
KA136362.1
ncRNA:23   GGGUUUUGUUUGGGUUGAAGGGA   1
  ****|||=|=|||||||||||||
targets:1557   GAGUAAAUAGACCCAACUUCCCU   1579

2.0 TSA: Vitis vinifera Locus_14043_Transcript_5/13_Confidence_0.345.Vivi mRNA sequence NA coding protein psRNATarget