Search result

BaseInfo

ncRNA ID novel_vvi_miR858
Species Vitis vinifera
Class miRNA
Genome position Chr16:2685808-2685897 [-]
Reference genome 12X
Source SRR1528361
Length 24
Mature sequence(if miRNA) 67 - UAAGUUGUUAGGUAAUGGGGCAAC - 90
Stem-loop(if miRNA) --                 G G       AUA    ----UCA  CU
  UAAGUUGUUAGGUAAUG G CAACAAU   UAUC       GG  A
  ||||||||||||||||| | |||||||   ||||       ||
  AUUCAACAAUCUAUUAU C GUUGUUA   AUAG       CC  A
GA                 A G       AAG    UUUAUUA  AC
Stem-loop sequence UAAGUUGUUAGGUAAUGGGGCAACAAUAUAUAUCUCAGGCUAACACCAUUAUUUGAUAGAAAUUGUUGGCAUAUUAUCUAACAACUUAAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
KA148776.1
ncRNA:24   CAACGGGGUAAUGGAUUGUUGAAU   1
  ||||*|=||||||||||=||||||
targets:147   GUUGACUCAUUACCUAAUAACUUA   170

2.5 TSA: Vitis vinifera Locus_2948_Transcript_1/3_Confidence_0.571.Vivi mRNA sequence NA coding protein psRNATarget