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BaseInfo

ncRNA ID novel_vvi_miR845
Species Vitis vinifera
Class miRNA
Genome position Chr14:28540331-28540426 [-]
Reference genome 12X
Source SRR1528361
Length 24
Mature sequence(if miRNA) 73 - UAUACUGAAUGUGUCUCUUUAAGA - 96
Stem-loop(if miRNA) --         U                       AG     A     U
  UAUACUGAA GUGUCUCUUUAAGAGACACUUUU  UAUAA UCCAA U
  ||||||||| |||||||||||||||||||||||  ||||| |||||
  AUAUGAUUU CACAGAGAAGUUUUCUGUGGAAG  AUGUU AGGUU U
AU         C                       --     A     U
Stem-loop sequence UAUACUGAAUGUGUCUCUUUAAGAGACACUUUUAGUAUAAAUCCAAUUUUUUGGAAUUGUAGAAGGUGUCUUUUGAAGAGACACCUUUAGUAUAUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
KA170781.1
ncRNA:24   AGAAUUUCUCUGUGUAAGUCAUAU   1
  ***|=||||||||*|||||||||=
targets:141   CAAUGAAGAGACAGAUUCAGUAUG   164

2.5 TSA: Vitis vinifera Locus_19687_Transcript_3/3_Confidence_0.714.Vivi mRNA sequence NA coding protein psRNATarget
KA170780.1
ncRNA:24   AGAAUUUCUCUGUGUAAGUCAUAU   1
  ***|=||||||||*|||||||||=
targets:141   CAAUGAAGAGACAGAUUCAGUAUG   164

2.5 TSA: Vitis vinifera Locus_19687_Transcript_2/3_Confidence_0.714.Vivi mRNA sequence NA coding protein psRNATarget