Search result

BaseInfo

ncRNA ID	novel_vvi_miR834
Species	Vitis vinifera
Class	miRNA
Genome position	Chr12:1723781-1723973 [-]
Reference genome	12X
Source	SRR1528360
Length	24
Mature sequence(if miRNA)	170 - UAAACUGAAGCCUCAAUUGGCAAC - 193
Stem-loop(if miRNA)	--UA                    ------   A     U  UUUU    CUAAAA                   C    UU      CUAA     -    U     AACUGAAGCCUCAAUUGGCA      ACU UAGUU CA    UGAA      UCGCAGUUGCCAAUUGAGG UUCA  UUUAAA    AGGUU CAAU G     ||||||||||||||||||||      ||| ||||| ||    ||||      ||||||||||||||||||| ||||  ||||||    ||||| |||| G     UUGACUUCGGAGUUAACCGU      UGA AUCAA GU    ACUU      GGCGUCAACGGUUAACUCC AAGU  AAAUUU    UUCGA GUUA C UUAA                    UAACAC   A     -  UUUU    -----C                   A    -U      UUAC     C    A
Stem-loop sequence	UAAACUGAAGCCUCAAUUGGCAACUAUAGUUUCAUUUUUGAACUAAAAUCGCAGUUGCCAAUUGAGGCUUCAUUUUUAAACUAAAGGUUCAAUUGGCAAUUGCAGCUUCAUUUUUAAAUUGAAACCUCAAUUGGCAACUGCGGCUUCAUUUUUGAACUAAAGUCACAAUUGCCAAUUGAGGCUUCAGUUAAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
FQ397029.1	ncRNA:24   CAACGGUUAACUCCGAAGUCAAAU   1   |||-=*||||||*||||||||||| targets:343   GUU-UAAAUUGACGCUUCAGUUUA   365 Target Full Sequence	2.5	Vitis vinifera clone SS0AEB8YB11	NA	coding protein	psRNATarget
FQ379677.1	ncRNA:24   CAACGGUUAACUCCGAAGUCAAAU   1   |||-=*||||||*||||||||||| targets:301   GUU-UAAAUUGACGCUUCAGUUUA   323 Target Full Sequence	2.5	Vitis vinifera clone SS0AEA1YL19	NA	coding protein	psRNATarget
FQ386031.1	ncRNA:24   CAACGGUUAACUCCGAAGUCAAAU   1   |||-=*||||||*||||||||||| targets:344   GUU-UAAAUUGACGCUUCAGUUUA   366 Target Full Sequence	2.5	Vitis vinifera clone SS0AEB30YE10	NA	coding protein	psRNATarget
XM_002277367.4	ncRNA:24   CAACGGUUAACUCCGAAGUCAAAU   1   |||-=*||||||*||||||||||| targets:398   GUU-UAAAUUGACGCUUCAGUUUA   420 Target Full Sequence	2.5	PREDICTED: Vitis vinifera ubiquitin-conjugating enzyme E2 A (UBC2), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_002277413.3	ncRNA:24   CAACGGUUAACUCCGAAGUCAAAU   1   |||-=*||||||*||||||||||| targets:447   GUU-UAAAUUGACGCUUCAGUUUA   469 Target Full Sequence	2.5	PREDICTED: Vitis vinifera ubiquitin-conjugating enzyme E2 A (UBC2), transcript variant X2, mRNA	NA	coding protein	psRNATarget
FQ396221.1	ncRNA:24   CAACGGUUAACUCCGAAGUCAAAU   1   |||-=*||||||*||||||||||| targets:288   GUU-UAAAUUGACGCUUCAGUUUA   310 Target Full Sequence	2.5	Vitis vinifera clone SS0AFA11YB14	NA	coding protein	psRNATarget
FQ396072.1	ncRNA:24   CAACGGUUAACUCCGAAGUCAAAU   1   |||-=*||||||*||||||||||| targets:288   GUU-UAAAUUGACGCUUCAGUUUA   310 Target Full Sequence	2.5	Vitis vinifera clone SS0AFA12YE10	NA	coding protein	psRNATarget