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BaseInfo

ncRNA ID novel_vvi_miR833
Species Vitis vinifera
Class miRNA
Genome position Chr10:6752010-6752076 [-]
Reference genome 12X
Source SRR1528360;SRR2029784
Length 24
Mature sequence(if miRNA) 44 - AUUUGGUUGGUGAUGAGAUAGGAU - 67
Stem-loop(if miRNA) --          UG                UAU
  AUUUGGUUGG  AUGAGAUAGGAUAGGU   C
  ||||||||||  ||||||||||||||||   U
  UAAACUAACU  UAUUCUAUUUUAUUCA   C
CA          UA                CUA
Stem-loop sequence AUUUGGUUGGUGAUGAGAUAGGAUAGGUUAUCUCAUCACUUAUUUUAUCUUAUAUUCAAUCAAAUAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
KA137491.1
ncRNA:24   UAGGAUAGAGUAGUGGUUGGUUUA   1
  ||==||||*||||||||||||||*
targets:175   AUUUUAUCACAUCACCAACCAAAC   198

2.0 TSA: Vitis vinifera Locus_6590_Transcript_4/6_Confidence_0.400.Vivi mRNA sequence NA coding protein psRNATarget
KA141942.1
ncRNA:24   UAGGAUAGAGUAGUGGUUGGUUUA   1
  ||=|*||=|||||||||||*||||
targets:2640   AUUCAAUUUCAUCACCAACAAAAU   2663

2.5 TSA: Vitis vinifera Locus_1095_Transcript_10/12_Confidence_0.381.Vivi mRNA sequence NA coding protein psRNATarget