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BaseInfo

ncRNA ID novel_vvi_miR832
Species Vitis vinifera
Class miRNA
Genome position Chr9:9913946-9913997 [+]
Reference genome 12X
Source SRR1528360
Length 24
Mature sequence(if miRNA) 1 - GCAUAGGUUUAGAAGAAUGAAGCC - 24
Stem-loop(if miRNA) -  --       -U       U     
 GC  AUAGGUU  AGAAGAA GAAGCC
 ||  |||||||  ||||||| |||||U
 CG  UGUUCAA  UCUUCUU CUUCGU
U  GU       CU       -     
Stem-loop sequence GCAUAGGUUUAGAAGAAUGAAGCCUUGCUUCUUCUUCUUCAACUUGUUGGCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_002268562.4
ncRNA:24   CCGAAGUAAGAAGAUUUGGAUACG   1
  ||||*|||||*|||||||||*|||
targets:1487   GGCUCCAUUCCUCUAAACCUUUGC   1510

2.5 PREDICTED: Vitis vinifera leucine-rich repeat receptor-like protein kinase TDR (LOC100266344), mRNA NA coding protein psRNATarget
KA148943.1
ncRNA:24   CCGAAGUAAGAAGAUUUGGAUACG   1
  ||||*|||||*|||||||||*|||
targets:1534   GGCUCCAUUCCUCUAAACCUUUGC   1557

2.5 TSA: Vitis vinifera Locus_4944_Transcript_4/4_Confidence_0.500.Vivi mRNA sequence NA coding protein psRNATarget