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BaseInfo

ncRNA ID	novel_vvi_miR828
Species	Vitis vinifera
Class	miRNA
Genome position	Chr7:3867514-3867635 [-]
Reference genome	12X
Source	SRR1528360
Length	24
Mature sequence(if miRNA)	1 - UAAACUGAAGCCUCAAUUGGCAAC - 24
Stem-loop(if miRNA)	--      C          U   U   C      C      GG     A  A   AAUUUU   UGUCAA UGAGGCUUCA UUU AAA UGAAGC UCAAUU  UAAUU AG CUU      U   |||||| |||||||||| ||| ||| |||||| ||||||  ||||| || |||   ACGGUU ACUCCGAAGU AAA UUU ACUUUG AGUUAA  GUUAA UC GAA      U CA      A          C   U   U      A      UU     C  C   AUCAAU
Stem-loop sequence	UGUCAACUGAGGCUUCAUUUUUAAACUGAAGCCUCAAUUGGUAAUUAAGACUUAAUUUUUUUAACUAAAGCCUCAAUUGUUAAUUGAAGUUUCAUUUUUAAACUGAAGCCUCAAUUGGCAAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
FQ397029.1	ncRNA:24   CAACGGUUAACUCCGAAGUCAAAU   1   |||-=*||||||*||||||||||| targets:343   GUU-UAAAUUGACGCUUCAGUUUA   365 Target Full Sequence	2.5	Vitis vinifera clone SS0AEB8YB11	NA	coding protein	psRNATarget
FQ379677.1	ncRNA:24   CAACGGUUAACUCCGAAGUCAAAU   1   |||-=*||||||*||||||||||| targets:301   GUU-UAAAUUGACGCUUCAGUUUA   323 Target Full Sequence	2.5	Vitis vinifera clone SS0AEA1YL19	NA	coding protein	psRNATarget
FQ386031.1	ncRNA:24   CAACGGUUAACUCCGAAGUCAAAU   1   |||-=*||||||*||||||||||| targets:344   GUU-UAAAUUGACGCUUCAGUUUA   366 Target Full Sequence	2.5	Vitis vinifera clone SS0AEB30YE10	NA	coding protein	psRNATarget
XM_002277367.4	ncRNA:24   CAACGGUUAACUCCGAAGUCAAAU   1   |||-=*||||||*||||||||||| targets:398   GUU-UAAAUUGACGCUUCAGUUUA   420 Target Full Sequence	2.5	PREDICTED: Vitis vinifera ubiquitin-conjugating enzyme E2 A (UBC2), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_002277413.3	ncRNA:24   CAACGGUUAACUCCGAAGUCAAAU   1   |||-=*||||||*||||||||||| targets:447   GUU-UAAAUUGACGCUUCAGUUUA   469 Target Full Sequence	2.5	PREDICTED: Vitis vinifera ubiquitin-conjugating enzyme E2 A (UBC2), transcript variant X2, mRNA	NA	coding protein	psRNATarget
FQ396221.1	ncRNA:24   CAACGGUUAACUCCGAAGUCAAAU   1   |||-=*||||||*||||||||||| targets:288   GUU-UAAAUUGACGCUUCAGUUUA   310 Target Full Sequence	2.5	Vitis vinifera clone SS0AFA11YB14	NA	coding protein	psRNATarget
FQ396072.1	ncRNA:24   CAACGGUUAACUCCGAAGUCAAAU   1   |||-=*||||||*||||||||||| targets:288   GUU-UAAAUUGACGCUUCAGUUUA   310 Target Full Sequence	2.5	Vitis vinifera clone SS0AFA12YE10	NA	coding protein	psRNATarget