Search result

BaseInfo

ncRNA ID	osa-miR1860-3p
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:934420-934567 [-]
Reference genome	MSU7
Source	miRBase
Length	22
Mature sequence(if miRNA)	37 - AUCUGGAAGCUAGGUUUUCUCU - 58
Stem-loop(if miRNA)	UCUU          UA   -----U                         -             -   AUUUGCCUCA     GAUUUGAUGG  GGG      UAGUGUUAUUUGUAAAGAGAAAACC AGCUUCCAGAUCU CGA          A     ||||||||||  |||      ||||||||||||||||||||||||| ||||||||||||| |||          A     CUGGAUUACC  CCC      AUCACAAUAAACAUUUCUCUUUUGG UCGAAGGUCUAGA GUU          C --GU          --   UUUUUU                         A             U   CUCUUCUAUU
Stem-loop sequence	UCUUGAUUUGAUGGUAGGGUUAGUGUUAUUUGUAAAGAGAAAACCAGCUUCCAGAUCUCGAAUUUGCCUCAAACUUAUCUUCUCUUGUAGAUCUGGAAGCUAGGUUUUCUCUUUACAAAUAACACUAUUUUUUCCCCCAUUAGGUCUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK107434.1	ncRNA:22   UCUCUUUUGGAUCGAAGGUCUA   1   =*|||*=||||||||||||||* targets:1492   GAAGAUGACCUAGCUUCCAGAG   1513 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:002-128-A10, full insert sequence	NA	coding protein	psRNATarget
XM_015791731.1	ncRNA:22   UCUCUUUUGGAUCGAAGGUCUA   1   =*|||*=||||||||||||||* targets:4469   GAAGAUGACCUAGCUUCCAGAG   4490 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4342524 (LOC4342524), transcript variant X2, mRNA	uncharacterized LOC4342524(Os07g0173300)	coding protein	psRNATarget
XM_015791730.1	ncRNA:22   UCUCUUUUGGAUCGAAGGUCUA   1   =*|||*=||||||||||||||* targets:4565   GAAGAUGACCUAGCUUCCAGAG   4586 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4342524 (LOC4342524), transcript variant X1, mRNA	uncharacterized LOC4342524(Os07g0173300)	coding protein	psRNATarget

Reference

1	PMID:18687877 "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains"; Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C; Genome Res. 18:1456-1465(2008).