ncRNA ID | novel_vvi_miR824 |
Species | Vitis vinifera |
Class | miRNA |
Genome position | Chr5:4220547-4220659 [-] |
Reference genome | 12X |
Source | SRR1528360 |
Length | 24 |
Mature sequence(if miRNA) | 1 - CUGGGGAGGCCACUCUGUGAUGCC - 24 |
Stem-loop(if miRNA) |
--                              AUCAA   CAAGGUCCUUUUGGUUGC   CAUCACAGAGUGGCCUCCCUAGGAUUUGAA     GAC                  C   ||||||||||||||||||||||||||||||     |||                  C   GUAGUGUCUCACCGGAGGGGUCCUAAGCUU     UCA                  U CC                              ----G   UCGGGUCUACCAUGGUUC |
Stem-loop sequence | CAUCACAGAGUGGCCUCCCUAGGAUUUGAAAUCAAGACCAAGGUCCUUUUGGUUGCCCUCUUGGUACCAUCUGGGCUACUGUUCGAAUCCUGGGGAGGCCACUCUGUGAUGCC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_010650493.2 |
|
0.0 | PREDICTED: Vitis vinifera 17.9 kDa class II heat shock protein-like (LOC100256023), mRNA | NA | coding protein | psRNATarget | |||||||||
XM_019221955.1 |
|
2.0 | PREDICTED: Vitis vinifera receptor-like protein kinase (LOC100259600), mRNA | NA | coding protein | psRNATarget |