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BaseInfo

ncRNA ID novel_vvi_miR824
Species Vitis vinifera
Class miRNA
Genome position Chr5:4220547-4220659 [-]
Reference genome 12X
Source SRR1528360
Length 24
Mature sequence(if miRNA) 1 - CUGGGGAGGCCACUCUGUGAUGCC - 24
Stem-loop(if miRNA) --                              AUCAA   CAAGGUCCUUUUGGUUGC
  CAUCACAGAGUGGCCUCCCUAGGAUUUGAA     GAC                  C
  ||||||||||||||||||||||||||||||     |||                  C
  GUAGUGUCUCACCGGAGGGGUCCUAAGCUU     UCA                  U
CC                              ----G   UCGGGUCUACCAUGGUUC
Stem-loop sequence CAUCACAGAGUGGCCUCCCUAGGAUUUGAAAUCAAGACCAAGGUCCUUUUGGUUGCCCUCUUGGUACCAUCUGGGCUACUGUUCGAAUCCUGGGGAGGCCACUCUGUGAUGCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_010650493.2
ncRNA:24   CCGUAGUGUCUCACCGGAGGGGUC   1
  |||=||||||||||||||||||||
targets:523   GGCGUCACAGAGUGGCCUCCCCAG   546

0.0 PREDICTED: Vitis vinifera 17.9 kDa class II heat shock protein-like (LOC100256023), mRNA NA coding protein psRNATarget
XM_019221955.1
ncRNA:24   CCGUAGUGUCUCACCGGAGGGGUC   1
  *||=*|*||*||||||||||||||
targets:1706   AGCGACCCAUAGUGGCCUCCCCAG   1729

2.0 PREDICTED: Vitis vinifera receptor-like protein kinase (LOC100259600), mRNA NA coding protein psRNATarget