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BaseInfo

ncRNA ID	novel_vvi_miR818
Species	Vitis vinifera
Class	miRNA
Genome position	Chr3:1297483-1297680 [+]
Reference genome	12X
Source	SRR1528360
Length	23
Mature sequence(if miRNA)	1 - UUUUUGACUGAAUAGAAAAAACC - 23
Stem-loop(if miRNA)	--UU                  A           GGC         U          C   UUAC                       U     CUAUU     UUUGACUGAAUAGAAAAA CCAAAAUAUUU   UUUUUCUAU CAGCUAAAAG AAC    UGACAUCGUCCAACAUAACUAAA UGAAC     A     |||||||||||||||||| |||||||||||   ||||||||| |||||||||| |||    ||||||||||||||||||||||| |||||     A     AAAUUGACUUAUCUUUUU GGUUUUAUAAA   AAAAAGAUA GUUGAUUUUC UUG    ACUGUAGCAGGUUGUGUUGAUUU ACUUG     U CAAC                  C           AAA         -          A   UACA                       U     AACAA
Stem-loop sequence	UUUUUGACUGAAUAGAAAAAACCAAAAUAUUUGGCUUUUUCUAUUCAGCUAAAAGCAACUUACUGACAUCGUCCAACAUAACUAAAUUGAACCUAUUAAUAACAAGUUCAUUUUAGUUGUGUUGGACGAUGUCAACAUGUUACUUUUAGUUGAUAGAAAAAAAAAAAUAUUUUGGCUUUUUCUAUUCAGUUAAACAAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
KA159067.1	ncRNA:23   CCAAAAAAGAUAAGUCAGUUUUU   1   ||||||||||||||||||||||| targets:1464   GGUUUUUUCUAUUCAGUCAAAAA   1486 Target Full Sequence	0.0	TSA: Vitis vinifera Locus_4980_Transcript_3/7_Confidence_0.333.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA167155.1	ncRNA:23   CCAAAAAAGAUAAGUCAGUUUUU   1   ||*|||||||||||||*|||||| targets:3810   GGCUUUUUCUAUUCAGCCAAAAA   3832 Target Full Sequence	1.5	TSA: Vitis vinifera Locus_485_Transcript_5/10_Confidence_0.429.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA167153.1	ncRNA:23   CCAAAAAAGAUAAGUCAGUUUUU   1   ||*|||||||||||||*|||||| targets:3592   GGCUUUUUCUAUUCAGCCAAAAA   3614 Target Full Sequence	1.5	TSA: Vitis vinifera Locus_485_Transcript_1/10_Confidence_0.492.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA169318.1	ncRNA:23   CCAAAAAAGAUAAGUCAGUUUUU   1   **|||||||||||||*||||||| targets:28   UUUUUUUUCUAUUCAAUCAAAAA   50 Target Full Sequence	1.5	TSA: Vitis vinifera Locus_1027_Transcript_1/5_Confidence_0.444.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA159067.1	ncRNA:23   CCAAAAAAGAUAAGUCAGUUUUU   1   |*|||||||||||||||=||||= targets:1323   GAUUUUUUCUAUUCAGUUAAAAG   1345 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_4980_Transcript_3/7_Confidence_0.333.Vivi mRNA sequence	NA	coding protein	psRNATarget
XM_002275318.4	ncRNA:23   CCAAAAAAGAUAAGUCAGUUUUU   1   ||||||||=|||||||*|||||| targets:2021   GGUUUUUUUUAUUCAGCCAAAAA   2043 Target Full Sequence	2.5	PREDICTED: Vitis vinifera tRNA pseudouridine synthase A (LOC100242086), mRNA	NA	coding protein	psRNATarget
XM_002275318.4	ncRNA:23   CCAAAAAAGAUAAGUCAGUUUUU   1   ***||||||||||||||=||||= targets:1879   UACUUUUUCUAUUCAGUUAAAAG   1901 Target Full Sequence	2.5	PREDICTED: Vitis vinifera tRNA pseudouridine synthase A (LOC100242086), mRNA	NA	coding protein	psRNATarget