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BaseInfo

ncRNA ID novel_vvi_miR817
Species Vitis vinifera
Class miRNA
Genome position Chr3:2680746-2680944 [-]
Reference genome 12X
Source SRR1528360
Length 23
Mature sequence(if miRNA) 177 - UUUUUGACUGAAUAGAAAAAACC - 199
Stem-loop(if miRNA) --         GA          C           A                       C      A   C          A      G         U
  UUUUUGACU  AUAGAAAAAA CAAAUAUUUUG UUUUUUCUAUUCAGUUAAAAGUA CUUAUU AUA UAAUCAACAU AUUAAA UGAAUUUAU A
  |||||||||  |||||||||| ||||||||||| ||||||||||||||||||||||| |||||| ||| |||||||||| |||||| ||||||||| U
  AAAAACUGA  UAUCUUUUUU GUUUAUAAAAU GAAAAAGAUAAGUCGAUUUUCAU GAGUAA UGU GUUGGUUGUA UAAUUU AUUUGAAUA C
CA         AC          A           C                       U      C   A          G      A         A
Stem-loop sequence UUUUUGACUGAAUAGAAAAAACCAAAUAUUUUGAUUUUUUCUAUUCAGUUAAAAGUACCUUAUUAAUACUAAUCAACAUAAUUAAAGUGAAUUUAUUAUCAAUAAGUUUAAUUUAAUGAUGUUGGUUGAUGUCAAUGAGUUACUUUUAGCUGAAUAGAAAAAGCUAAAAUAUUUGAUUUUUUCUAUCAAGUCAAAAAAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
KA159067.1
ncRNA:23   CCAAAAAAGAUAAGUCAGUUUUU   1
  |||||||||||||||||||||||
targets:1464   GGUUUUUUCUAUUCAGUCAAAAA   1486

0.0 TSA: Vitis vinifera Locus_4980_Transcript_3/7_Confidence_0.333.Vivi mRNA sequence NA coding protein psRNATarget
KA167155.1
ncRNA:23   CCAAAAAAGAUAAGUCAGUUUUU   1
  ||*|||||||||||||*||||||
targets:3810   GGCUUUUUCUAUUCAGCCAAAAA   3832

1.5 TSA: Vitis vinifera Locus_485_Transcript_5/10_Confidence_0.429.Vivi mRNA sequence NA coding protein psRNATarget
KA167153.1
ncRNA:23   CCAAAAAAGAUAAGUCAGUUUUU   1
  ||*|||||||||||||*||||||
targets:3592   GGCUUUUUCUAUUCAGCCAAAAA   3614

1.5 TSA: Vitis vinifera Locus_485_Transcript_1/10_Confidence_0.492.Vivi mRNA sequence NA coding protein psRNATarget
KA169318.1
ncRNA:23   CCAAAAAAGAUAAGUCAGUUUUU   1
  **|||||||||||||*|||||||
targets:28   UUUUUUUUCUAUUCAAUCAAAAA   50

1.5 TSA: Vitis vinifera Locus_1027_Transcript_1/5_Confidence_0.444.Vivi mRNA sequence NA coding protein psRNATarget
KA159067.1
ncRNA:23   CCAAAAAAGAUAAGUCAGUUUUU   1
  |*|||||||||||||||=||||=
targets:1323   GAUUUUUUCUAUUCAGUUAAAAG   1345

2.5 TSA: Vitis vinifera Locus_4980_Transcript_3/7_Confidence_0.333.Vivi mRNA sequence NA coding protein psRNATarget
XM_002275318.4
ncRNA:23   CCAAAAAAGAUAAGUCAGUUUUU   1
  ||||||||=|||||||*||||||
targets:2021   GGUUUUUUUUAUUCAGCCAAAAA   2043

2.5 PREDICTED: Vitis vinifera tRNA pseudouridine synthase A (LOC100242086), mRNA NA coding protein psRNATarget
XM_002275318.4
ncRNA:23   CCAAAAAAGAUAAGUCAGUUUUU   1
  ***||||||||||||||=||||=
targets:1879   UACUUUUUCUAUUCAGUUAAAAG   1901

2.5 PREDICTED: Vitis vinifera tRNA pseudouridine synthase A (LOC100242086), mRNA NA coding protein psRNATarget