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BaseInfo

ncRNA ID osa-miR1860-5p
Species Oryza sativa
Class miRNA
Genome position Chr1:934420-934567 [-]
Reference genome MSU7
Source miRBase
Length 21
Mature sequence(if miRNA) 91 - AGAAAACCAGCUUCCAGAUCU - 111
Stem-loop(if miRNA) UCUU          UA   -----U                         -             -   AUUUGCCUCA
    GAUUUGAUGG  GGG      UAGUGUUAUUUGUAAAGAGAAAACC AGCUUCCAGAUCU CGA          A
    ||||||||||  |||      ||||||||||||||||||||||||| ||||||||||||| |||          A
    CUGGAUUACC  CCC      AUCACAAUAAACAUUUCUCUUUUGG UCGAAGGUCUAGA GUU          C
--GU          --   UUUUUU                         A             U   CUCUUCUAUU
Stem-loop sequence UCUUGAUUUGAUGGUAGGGUUAGUGUUAUUUGUAAAGAGAAAACCAGCUUCCAGAUCUCGAAUUUGCCUCAAACUUAUCUUCUCUUGUAGAUCUGGAAGCUAGGUUUUCUCUUUACAAAUAACACUAUUUUUUCCCCCAUUAGGUCUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
LQ235676.1
ncRNA:21   UCUAGACCUUCGA-CCAAAAGA   1
  |||||||||||||-||||||||
targets:69   AGAUCUGGAAGCUAGGUUUUCU   90

3.0 Sequence 1671 from Patent EP2985353 NA coding protein psRNATarget
HI403546.1
ncRNA:21   UCUAGACCUUCGA-CCAAAAGA   1
  |||||||||||||-||||||||
targets:69   AGAUCUGGAAGCUAGGUUUUCU   90

3.0 Sequence 1671 from Patent EP2074227 NA coding protein psRNATarget
JB164007.1
ncRNA:21   UCUAGACCUUCGA-CCAAAAGA   1
  |||||||||||||-||||||||
targets:69   AGAUCUGGAAGCUAGGUUUUCU   90

3.0 Sequence 1671 from Patent EP2559767 NA coding protein psRNATarget
AK064505.1
ncRNA:21   UCUAGACCUUCGACCAAAAGA   1
  ||=||||||||||*|||||||
targets:23   AGGUCUGGAAGCUUGUUUUCU   43

2.5 Oryza sativa Japonica Group cDNA clone:002-111-D09, full insert sequence NA coding protein psRNATarget
XM_015763490.1
ncRNA:21   UCUAGACCUUCGACCAAAAGA   1
  ||=||||||||||*|||||||
targets:814   AGGUCUGGAAGCUUGUUUUCU   834

2.5 PREDICTED: Oryza sativa Japonica Group DNA polymerase alpha subunit B (LOC4351872), mRNA DNA polymerase alpha subunit B(LOC4351872) coding protein psRNATarget
XM_015769771.1
ncRNA:21   UCUAGACCUUCGACCAAAAGA   1
  =||||*||||||||||*||||
targets:1300   GGAUCGGGAAGCUGGUGUUCU   1320

2.5 PREDICTED: Oryza sativa Japonica Group inactive leucine-rich repeat receptor-like serine/threonine-protein kinase At1g60630 (LOC4331246), mRNA inactive leucine-rich repeat receptor-like serine/threonine-protein kinase At1g60630(LOC4331246) coding protein psRNATarget
XM_015762365.1
ncRNA:21   UCUAGA-CCUUCGACCAAAAGA   1
  ***|||-|||||||||||||||
targets:3666   UUUUCUUGGAAGCUGGUUUUCU   3687

3.0 PREDICTED: Oryza sativa Japonica Group disease resistance protein RPM1 (LOC4350109), mRNA disease resistance protein RPM1(LOC4350109) coding protein psRNATarget

Reference

1 PMID:18687877
"A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains";
Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C;
Genome Res. 18:1456-1465(2008).