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BaseInfo

ncRNA ID	osa-miR1860-5p
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:934420-934567 [-]
Reference genome	MSU7
Source	miRBase
Length	21
Mature sequence(if miRNA)	91 - AGAAAACCAGCUUCCAGAUCU - 111
Stem-loop(if miRNA)	UCUU          UA   -----U                         -             -   AUUUGCCUCA     GAUUUGAUGG  GGG      UAGUGUUAUUUGUAAAGAGAAAACC AGCUUCCAGAUCU CGA          A     ||||||||||  |||      ||||||||||||||||||||||||| ||||||||||||| |||          A     CUGGAUUACC  CCC      AUCACAAUAAACAUUUCUCUUUUGG UCGAAGGUCUAGA GUU          C --GU          --   UUUUUU                         A             U   CUCUUCUAUU
Stem-loop sequence	UCUUGAUUUGAUGGUAGGGUUAGUGUUAUUUGUAAAGAGAAAACCAGCUUCCAGAUCUCGAAUUUGCCUCAAACUUAUCUUCUCUUGUAGAUCUGGAAGCUAGGUUUUCUCUUUACAAAUAACACUAUUUUUUCCCCCAUUAGGUCUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235676.1	ncRNA:21   UCUAGACCUUCGA-CCAAAAGA   1   |||||||||||||-|||||||| targets:69   AGAUCUGGAAGCUAGGUUUUCU   90 Target Full Sequence	3.0	Sequence 1671 from Patent EP2985353	NA	coding protein	psRNATarget
HI403546.1	ncRNA:21   UCUAGACCUUCGA-CCAAAAGA   1   |||||||||||||-|||||||| targets:69   AGAUCUGGAAGCUAGGUUUUCU   90 Target Full Sequence	3.0	Sequence 1671 from Patent EP2074227	NA	coding protein	psRNATarget
JB164007.1	ncRNA:21   UCUAGACCUUCGA-CCAAAAGA   1   |||||||||||||-|||||||| targets:69   AGAUCUGGAAGCUAGGUUUUCU   90 Target Full Sequence	3.0	Sequence 1671 from Patent EP2559767	NA	coding protein	psRNATarget
AK064505.1	ncRNA:21   UCUAGACCUUCGACCAAAAGA   1   ||=||||||||||*||||||| targets:23   AGGUCUGGAAGCUUGUUUUCU   43 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-111-D09, full insert sequence	NA	coding protein	psRNATarget
XM_015763490.1	ncRNA:21   UCUAGACCUUCGACCAAAAGA   1   ||=||||||||||*||||||| targets:814   AGGUCUGGAAGCUUGUUUUCU   834 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group DNA polymerase alpha subunit B (LOC4351872), mRNA	DNA polymerase alpha subunit B(LOC4351872)	coding protein	psRNATarget
XM_015769771.1	ncRNA:21   UCUAGACCUUCGACCAAAAGA   1   =||||*||||||||||*|||| targets:1300   GGAUCGGGAAGCUGGUGUUCU   1320 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group inactive leucine-rich repeat receptor-like serine/threonine-protein kinase At1g60630 (LOC4331246), mRNA	inactive leucine-rich repeat receptor-like serine/threonine-protein kinase At1g60630(LOC4331246)	coding protein	psRNATarget
XM_015762365.1	ncRNA:21   UCUAGA-CCUUCGACCAAAAGA   1   ***|||-||||||||||||||| targets:3666   UUUUCUUGGAAGCUGGUUUUCU   3687 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group disease resistance protein RPM1 (LOC4350109), mRNA	disease resistance protein RPM1(LOC4350109)	coding protein	psRNATarget

Reference

1	PMID:18687877 "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains"; Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C; Genome Res. 18:1456-1465(2008).