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BaseInfo

ncRNA ID	osa-miR531b
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:833931-833999 [-]
Reference genome	MSU7
Source	miRBase
Length	20
Mature sequence(if miRNA)	40 - CUCGCCGGGGCUGCGUGCCG - 59
Stem-loop(if miRNA)	--C     CU      C     C    UG  -  C    CGAGC  UGCUCG CGGGG UGCG  CC GC A    |||||  |||||| ||||| ||||  || ||    GCUCG  GCGAGC GCCCC ACGC  GG CG U GCA     UU      U     U    GU  U  A
Stem-loop sequence	CCGAGCCUUGCUCGCCGGGGCUGCGUGCCGCCAUAGCUGGUGCGCAUCCCCGUCGAGCGUUGCUCGACG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK072288.1	ncRNA:20   GCCGUGCGUCGGGGCCGCUC   1   *|||=|||=||||||||||| targets:1175   AGGCGCGCGGCCCCGGCGAG   1194 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023012O05, full insert sequence	NA	coding protein	psRNATarget
XM_015756552.1	ncRNA:20   GCCGUGCGUCGGGGCCGCUC   1   *|||=|||=||||||||||| targets:1473   AGGCGCGCGGCCCCGGCGAG   1492 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein NUCLEAR FUSION DEFECTIVE 4 (LOC4347702), mRNA	protein NUCLEAR FUSION DEFECTIVE 4(LOC4347702)	coding protein	psRNATarget
AK099869.1	ncRNA:20   GCCGUGCGUCGGGGCCGCUC   1   *|||=|||=||||||||||| targets:1171   AGGCGCGCGGCCCCGGCGAG   1190 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013111E22, full insert sequence	NA	coding protein	psRNATarget
AK105374.1	ncRNA:20   GCCGUGCGUCGGGGCCGCUC   1   *|||=|||=||||||||||| targets:1164   AGGCGCGCGGCCCCGGCGAG   1183 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-120-D05, full insert sequence	NA	coding protein	psRNATarget
XM_015764945.1	ncRNA:20   GCCGUGCGUCGGGGCCGCUC   1   *||||||||||||||||*|| targets:19   AGGCACGCAGCCCCGGCAAG   38 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group chloroplast sensor kinase, chloroplastic (LOC9272053), transcript variant X9, mRNA	chloroplast sensor kinase, chloroplastic(LOC9272053)	coding protein	psRNATarget
XM_015764944.1	ncRNA:20   GCCGUGCGUCGGGGCCGCUC   1   *||||||||||||||||*|| targets:18   AGGCACGCAGCCCCGGCAAG   37 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group chloroplast sensor kinase, chloroplastic (LOC9272053), transcript variant X8, mRNA	chloroplast sensor kinase, chloroplastic(LOC9272053)	coding protein	psRNATarget
XM_015764943.1	ncRNA:20   GCCGUGCGUCGGGGCCGCUC   1   *||||||||||||||||*|| targets:19   AGGCACGCAGCCCCGGCAAG   38 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group chloroplast sensor kinase, chloroplastic (LOC9272053), transcript variant X7, mRNA	chloroplast sensor kinase, chloroplastic(LOC9272053)	coding protein	psRNATarget
XM_015764936.1	ncRNA:20   GCCGUGCGUCGGGGCCGCUC   1   *||||||||||||||||*|| targets:18   AGGCACGCAGCCCCGGCAAG   37 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group chloroplast sensor kinase, chloroplastic (LOC9272053), transcript variant X1, mRNA	chloroplast sensor kinase, chloroplastic(LOC9272053)	coding protein	psRNATarget
XM_015764946.1	ncRNA:20   GCCGUGCGUCGGGGCCGCUC   1   *||||||||||||||||*|| targets:20   AGGCACGCAGCCCCGGCAAG   39 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group chloroplast sensor kinase, chloroplastic (LOC9272053), transcript variant X10, mRNA	chloroplast sensor kinase, chloroplastic(LOC9272053)	coding protein	psRNATarget
XM_015764938.1	ncRNA:20   GCCGUGCGUCGGGGCCGCUC   1   *||||||||||||||||*|| targets:18   AGGCACGCAGCCCCGGCAAG   37 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group chloroplast sensor kinase, chloroplastic (LOC9272053), transcript variant X3, mRNA	chloroplast sensor kinase, chloroplastic(LOC9272053)	coding protein	psRNATarget
XM_015764937.1	ncRNA:20   GCCGUGCGUCGGGGCCGCUC   1   *||||||||||||||||*|| targets:18   AGGCACGCAGCCCCGGCAAG   37 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group chloroplast sensor kinase, chloroplastic (LOC9272053), transcript variant X2, mRNA	chloroplast sensor kinase, chloroplastic(LOC9272053)	coding protein	psRNATarget
XM_015764941.1	ncRNA:20   GCCGUGCGUCGGGGCCGCUC   1   *||||||||||||||||*|| targets:18   AGGCACGCAGCCCCGGCAAG   37 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group chloroplast sensor kinase, chloroplastic (LOC9272053), transcript variant X5, mRNA	chloroplast sensor kinase, chloroplastic(LOC9272053)	coding protein	psRNATarget
XM_015764940.1	ncRNA:20   GCCGUGCGUCGGGGCCGCUC   1   *||||||||||||||||*|| targets:18   AGGCACGCAGCCCCGGCAAG   37 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group chloroplast sensor kinase, chloroplastic (LOC9272053), transcript variant X4, mRNA	chloroplast sensor kinase, chloroplastic(LOC9272053)	coding protein	psRNATarget
XM_015764942.1	ncRNA:20   GCCGUGCGUCGGGGCCGCUC   1   *||||||||||||||||*|| targets:18   AGGCACGCAGCCCCGGCAAG   37 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group chloroplast sensor kinase, chloroplastic (LOC9272053), transcript variant X6, mRNA	chloroplast sensor kinase, chloroplastic(LOC9272053)	coding protein	psRNATarget
CT835058.1	ncRNA:20   GCCGUGCGUCGGGGCCGCUC   1   ||||||||||||*||||||* targets:920   CGGCACGCAGCCGCGGCGAC   939 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN007O14, full insert sequence	NA	coding protein	psRNATarget
XM_015779077.1	ncRNA:20   GCCGUGCGUCGGGGCCGCUC   1   ||||||||||||*||||||* targets:919   CGGCACGCAGCCGCGGCGAC   938 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4335656 (LOC4335656), mRNA	uncharacterized LOC4335656(LOC4335656)	coding protein	psRNATarget
AK240915.1	ncRNA:20   GCCGUGCGUCGGGGCCGCUC   1   ||||||||||||*||||||* targets:855   CGGCACGCAGCCGCGGCGAC   874 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065037K20, full insert sequence	NA	coding protein	psRNATarget

Reference

1	PMID:18687877 "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains"; Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C; Genome Res. 18:1456-1465(2008).