ncRNA ID | novel_vvi_miR795 |
Species | Vitis vinifera |
Class | miRNA |
Genome position | Chr14:22776875-22776949 [+] |
Reference genome | 12X |
Source | SRR1528360;SRR1528361 |
Length | 23 |
Mature sequence(if miRNA) | 53 - AAUUAUGUUGGUUGAUGUCAAUG - 75 |
Stem-loop(if miRNA) |
--                   C    GA        U   UUGAUAUUAACCAAUAUGA UAAA  GAACUUGU A   ||||||||||||||||||| ||||  |||||||| U   AACUGUAGUUGGUUGUAUU AUUU  UUUGAAUA C GU                   A    AA        A |
Stem-loop sequence | UUGAUAUUAACCAAUAUGACUAAAGAGAACUUGUUAUCAAUAAGUUUAAUUUAAUUAUGUUGGUUGAUGUCAAUG |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
KA139149.1 |
|
1.5 | TSA: Vitis vinifera Locus_1202_Transcript_8/9_Confidence_0.400.Vivi mRNA sequence | NA | coding protein | psRNATarget | |||||||||
XM_019224211.1 |
|
2.5 | PREDICTED: Vitis vinifera uncharacterized LOC100263302 (LOC100263302), transcript variant X2, mRNA | NA | coding protein | psRNATarget | |||||||||
XM_019223252.1 |
|
2.5 | PREDICTED: Vitis vinifera uncharacterized LOC100249012 (LOC100249012), mRNA | NA | coding protein | psRNATarget |