ncRNA ID | novel_vvi_miR784 |
Species | Vitis vinifera |
Class | miRNA |
Genome position | Chr6:8159531-8159648 [+] |
Reference genome | 12X |
Source | SRR1528359 |
Length | 20 |
Mature sequence(if miRNA) | 99 - CGCUAUCUAUCCUGAGUUUC - 118 |
Stem-loop(if miRNA) |
--         G             --A  --C       AAA   UUGU      -    A   AGCUCAGGA GGAUAGCGCCAUG   GC   AUGAUGA   UGA    UGAGUU GAAA U   ||||||||| |||||||||||||   ||   |||||||   |||    |||||| ||||   UUGAGUCCU UCUAUCGCGGUGU   UG   UACUACU   GUU    GUUCGA CUUU U CU         A             GUG  UUU       -GG   UUUU      U    U |
Stem-loop sequence | AGCUCAGGAGGGAUAGCGCCAUGAGCCAUGAUGAAAAUGAUUGUUGAGUUGAAAAUUUUUUCUAGCUUGUUUUUUGGGUCAUCAUUUUGUGUGUGUGGCGCUAUCUAUCCUGAGUUUC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
KA165260.1 |
|
0.0 | TSA: Vitis vinifera Locus_41030_Transcript_1/1_Confidence_1.000.Vivi mRNA sequence | NA | coding protein | psRNATarget | |||||||||
KA168383.1 |
|
1.5 | TSA: Vitis vinifera Locus_26896_Transcript_1/1_Confidence_1.000.Vivi mRNA sequence | NA | coding protein | psRNATarget |