Search result

BaseInfo

ncRNA ID novel_vvi_miR784
Species Vitis vinifera
Class miRNA
Genome position Chr6:8159531-8159648 [+]
Reference genome 12X
Source SRR1528359
Length 20
Mature sequence(if miRNA) 99 - CGCUAUCUAUCCUGAGUUUC - 118
Stem-loop(if miRNA) --         G             --A  --C       AAA   UUGU      -    A
  AGCUCAGGA GGAUAGCGCCAUG   GC   AUGAUGA   UGA    UGAGUU GAAA U
  ||||||||| |||||||||||||   ||   |||||||   |||    |||||| ||||
  UUGAGUCCU UCUAUCGCGGUGU   UG   UACUACU   GUU    GUUCGA CUUU U
CU         A             GUG  UUU       -GG   UUUU      U    U
Stem-loop sequence AGCUCAGGAGGGAUAGCGCCAUGAGCCAUGAUGAAAAUGAUUGUUGAGUUGAAAAUUUUUUCUAGCUUGUUUUUUGGGUCAUCAUUUUGUGUGUGUGGCGCUAUCUAUCCUGAGUUUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
KA165260.1
ncRNA:20   CUUUGAGUCCUAUCUAUCGC   1
  ||||||||||||||||||||
targets:342   GAAACUCAGGAUAGAUAGCG   361

0.0 TSA: Vitis vinifera Locus_41030_Transcript_1/1_Confidence_1.000.Vivi mRNA sequence NA coding protein psRNATarget
KA168383.1
ncRNA:20   CUUUGAGUCCUAUCUAUCGC   1
  ||||||||||||=|||||||
targets:313   GAAACUCAGGAUGGAUAGCG   332

1.5 TSA: Vitis vinifera Locus_26896_Transcript_1/1_Confidence_1.000.Vivi mRNA sequence NA coding protein psRNATarget