Search result

BaseInfo

ncRNA ID	novel_vvi_miR782
Species	Vitis vinifera
Class	miRNA
Genome position	Chr4:3574811-3574917 [+]
Reference genome	12X
Source	SRR1528359
Length	24
Mature sequence(if miRNA)	84 - ACUUCCUAGAAUCAUUGUCAAACG - 107
Stem-loop(if miRNA)	--             G    U           CC       CC        UA   UUUGACAGUGGUU UGGG AGUGUUUUUAG  UUUCUAA  CUUGAAAA  U   ||||||||||||| |||| |||||||||||  |||||||  ||||||||  U   AAACUGUUACUAA AUCC UCACAAAGAUC  AAAGAUU  GAACUUUU  C GC             G    U           AU       AU        UA
Stem-loop sequence	UUUGACAGUGGUUGUGGGUAGUGUUUUUAGCCUUUCUAACCCUUGAAAAUAUUCAUUUUUCAAGUAUUAGAAAUACUAGAAACACUUCCUAGAAUCAUUGUCAAACG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
KA159796.1	ncRNA:24   GCAAACUGUUACUAAGAUCCUUCA   1   |||||||||=|||||=|||||||| targets:2586   CGUUUGACAGUGAUUUUAGGAAGU   2609 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_3174_Transcript_7/8_Confidence_0.565.Vivi mRNA sequence	NA	coding protein	psRNATarget
FQ390097.1	ncRNA:24   GCAAACUGUUACUAAGAUCCUUCA   1   =||||||=|||||||||||*|||| targets:1101   UGUUUGAUAAUGAUUCUAGAAAGU   1124 Target Full Sequence	2.5	Vitis vinifera clone SS0AEB18YL19	NA	coding protein	psRNATarget
XM_002279172.4	ncRNA:24   GCAAACUGUUACUAAGAUCCUUCA   1   =||||||=|||||||||||*|||| targets:1160   UGUUUGAUAAUGAUUCUAGAAAGU   1183 Target Full Sequence	2.5	PREDICTED: Vitis vinifera peroxidase 20 (LOC100262575), mRNA	NA	coding protein	psRNATarget
KA138708.1	ncRNA:24   GCAAACUGUUACUAAGAUCCUUCA   1   =|*||||=|=|||||||||||||* targets:2527   UGAUUGAUAGUGAUUCUAGGAAGC   2550 Target Full Sequence	3.0	TSA: Vitis vinifera Locus_12129_Transcript_2/5_Confidence_0.636.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA138707.1	ncRNA:24   GCAAACUGUUACUAAGAUCCUUCA   1   =|*||||=|=|||||||||||||* targets:2567   UGAUUGAUAGUGAUUCUAGGAAGC   2590 Target Full Sequence	3.0	TSA: Vitis vinifera Locus_12129_Transcript_1/5_Confidence_0.636.Vivi mRNA sequence	NA	coding protein	psRNATarget