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BaseInfo

ncRNA ID novel_vvi_miR767
Species Vitis vinifera
Class miRNA
Genome position Chr18:27357624-27357777 [+]
Reference genome 12X
Source SRR1528359;SRR1528371;SRR1528382;SRR1528385;SRR890731
Length 21
Mature sequence(if miRNA) 134 - CUUGUUAUUGGAUCCAUACUA - 154
Stem-loop(if miRNA) --     AAC           A                       G            G   -  C     AGUGUG
  GUAUG   CCAAUAACAAG AGGCAUGUGUGGGGCAUAAUAGA AAUGCAAAGAAA GGU UG UAUUG      A
  |||||   ||||||||||| ||||||||||||||||||||||| |||||||||||| ||| || |||||      U
  CAUAC   GGUUAUUGUUC UCCGUACACACCCUGUAUUAUCU UUACGUUUUUUU CCA AC GUAAC      A
AU     CUA           C                       G            A   U  A     AGGGUU
Stem-loop sequence GUAUGAACCCAAUAACAAGAAGGCAUGUGUGGGGCAUAAUAGAGAAUGCAAAGAAAGGGUUGCUAUUGAGUGUGAUAUUGGGACAAUGACAUACCAUUUUUUUGCAUUGUCUAUUAUGUCCCACACAUGCCUCCUUGUUAUUGGAUCCAUACUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
KA163747.1
ncRNA:21   AUCAUAC-CUAGGUUAUUGUUC   1
  *|||||*-||||||||||||||
targets:1097   GAGUAUCUGAUCCAAUAACAAG   1118

3.0 TSA: Vitis vinifera Locus_9547_Transcript_7/9_Confidence_0.333.Vivi mRNA sequence NA coding protein psRNATarget