Search result

BaseInfo

ncRNA ID	novel_vvi_miR764
Species	Vitis vinifera
Class	miRNA
Genome position	Chr15:5659742-5659831 [+]
Reference genome	12X
Source	SRR1528359
Length	21
Mature sequence(if miRNA)	1 - UCAUAUCCCAUGUUUGGUUAG - 21
Stem-loop(if miRNA)	--UCA   C            A U    G    --A        AAC      UAU CCAUGUUUGGUU G GAUA AAGA   GAUAAGUU   C      ||| |||||||||||| | |||| ||||   ||||||||      AUA GGUACAAACCAA C UUAU UUCU   CUAUUCAA   U AUGGG   A            - -    A    AUA        CAC
Stem-loop sequence	UCAUAUCCCAUGUUUGGUUAGUGAUAGAAGAAGAUAAGUUAACCUCACAACUUAUCAUAUCUUAUAUUCAACCAAACAUGGAAUAGGGUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
KA137491.1	ncRNA:21   GAUUGGUUUGUACCCUAUACU   1   |*||||||||||||||||||| targets:189   CCAACCAAACAUGGGAUAUGA   209 Target Full Sequence	0.0	TSA: Vitis vinifera Locus_6590_Transcript_4/6_Confidence_0.400.Vivi mRNA sequence	NA	coding protein	psRNATarget
FQ380736.1	ncRNA:21   GAUUGGUUUGUACCCUAUACU   1   =|||||||||||*|||||||| targets:310   UUAACCAAACAUCGGAUAUGA   330 Target Full Sequence	1.5	Vitis vinifera clone SS0ACG36YH06	NA	coding protein	psRNATarget
KA138971.1	ncRNA:21   GAUUGGUUUGUACCCUAUACU   1   **||||||||||||||*|||| targets:189   GGAACCAAACAUGGGAAAUGA   209 Target Full Sequence	1.5	TSA: Vitis vinifera Locus_177_Transcript_1/3_Confidence_0.667.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA138970.1	ncRNA:21   GAUUGGUUUGUACCCUAUACU   1   **||||||||||||||*|||| targets:189   GGAACCAAACAUGGGAAAUGA   209 Target Full Sequence	1.5	TSA: Vitis vinifera Locus_177_Transcript_2/3_Confidence_0.778.Vivi mRNA sequence	NA	coding protein	psRNATarget
XM_002284054.3	ncRNA:21   GAUUGGUUUGUACCCUAUACU   1   **||||||||||||||*|||| targets:235   GGAACCAAACAUGGGAAAUGA   255 Target Full Sequence	1.5	PREDICTED: Vitis vinifera protein SPEAR3 (LOC100268083), mRNA	NA	coding protein	psRNATarget
XM_019220425.1	ncRNA:21   GAUUGGU-UUGUACCCUAUACU   1   **|||=|-|||||||||||||| targets:1854   AAAACUAUAACAUGGGAUAUGA   1875 Target Full Sequence	3.0	PREDICTED: Vitis vinifera uncharacterized protein At1g24485 (LOC100854381), mRNA	NA	coding protein	psRNATarget