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BaseInfo

ncRNA ID novel_vvi_miR757
Species Vitis vinifera
Class miRNA
Genome position Chr13:19982698-19982753 [+]
Reference genome 12X
Source SRR1528359;SRR1528365;SRR1528368
Length 24
Mature sequence(if miRNA) 33 - UUUGGUCCCUGUUCACUUAAGUGC - 56
Stem-loop(if miRNA) --      A        CU        A
  ACUUAA UGAACAGG  CCAAAACG C
  |||||| ||||||||  ||||||||
  UGAAUU ACUUGUCC  GGUUUUGC G
CG      C        CU        U
Stem-loop sequence ACUUAAAUGAACAGGCUCCAAAACGACGUCGUUUUGGUCCCUGUUCACUUAAGUGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
KA137654.1
ncRNA:24   CGUGAAUUCACUUGUCCCUGGUUU   1
  *||=||||||||||||||||||||
targets:16   UCAUUUAAGUGAACAGGGACCAAA   39

0.0 TSA: Vitis vinifera Locus_2778_Transcript_4/9_Confidence_0.062.Vivi mRNA sequence NA coding protein psRNATarget
XM_019225919.1
ncRNA:22   UGAAUUCACUUGUCCCUGGUUU   1
  |=||||||||||||||||||||
targets:1   AUUUAAGUGAACAGGGACCAAA   22

0.0 PREDICTED: Vitis vinifera uncharacterized LOC104882034 (LOC104882034), mRNA NA coding protein psRNATarget
KA157133.1
ncRNA:24   CGUGAAUUCACUUGUCCCUGGUUU   1
  *|*=||||**||||||||||||||
targets:564   UCUUUUAAAAGAACAGGGACCAAA   587

2.0 TSA: Vitis vinifera Locus_10143_Transcript_8/10_Confidence_0.393.Vivi mRNA sequence NA coding protein psRNATarget