Search result

BaseInfo

ncRNA ID	novel_vvi_miR754
Species	Vitis vinifera
Class	miRNA
Genome position	Chr9:19106871-19106935 [-]
Reference genome	12X
Source	SRR1528358
Length	23
Mature sequence(if miRNA)	43 - CUUUCUGCUAAAGUCAUCUGCCU - 65
Stem-loop(if miRNA)	--          AA     -        U UGA   CUUUCUGCUA  GUCAU CUGCCUCU G   A   ||||||||||  ||||| |||||||| |   GAGAGACGAU  CAGUA GACGGAGA U   G AC          GG     A        C UAG
Stem-loop sequence	CUUUCUGCUAAAGUCAUCUGCCUCUUGUGAAGGAUUCAGAGGCAGAAUGACGGUAGCAGAGAGCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_010646008.2	ncRNA:23   UCCGUCUACUGAAAUCGUCUUUC   1   **|=||=|||*|||||||||||| targets:1992   UAGUAGGUGAAUUUAGCAGAAAG   2014 Target Full Sequence	2.5	PREDICTED: Vitis vinifera transcription factor bHLH123 (LOC100267585), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_002280331.4	ncRNA:23   UCCGUCUACUGAAAUCGUCUUUC   1   **|=||=|||*|||||||||||| targets:1996   UAGUAGGUGAAUUUAGCAGAAAG   2018 Target Full Sequence	2.5	PREDICTED: Vitis vinifera transcription factor bHLH123 (LOC100267585), transcript variant X1, mRNA	NA	coding protein	psRNATarget
KA155475.1	ncRNA:23   UCCGUCUACUGAAAUCGUCUUUC   1   **|=||=|||*|||||||||||| targets:2023   UAGUAGGUGAAUUUAGCAGAAAG   2045 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_11344_Transcript_1/2_Confidence_1.000.Vivi mRNA sequence	NA	coding protein	psRNATarget