Search result

BaseInfo

ncRNA ID	novel_vvi_miR746
Species	Vitis vinifera
Class	miRNA
Genome position	Chr8:18659000-18659122 [+]
Reference genome	12X
Source	SRR1528358
Length	24
Mature sequence(if miRNA)	100 - AUUUCUCUUUAUCAUGUAGACAUG - 123
Stem-loop(if miRNA)	--            U   U       -A            A        AGU   C    UU   UGUCUACAUGGU AAG GGAGUUC  UACAUAUAUAGU UCAAGAAU   UUC UUUA  U   |||||||||||| ||| |||||||  |||||||||||| ||||||||   ||| ||||  G   ACAGAUGUACUA UUC CUUUAAG  GUGUAUAUAUCA AGUUCUUG   AAG AAGU  A GU            U   U       CG            C        AAU   -    UU
Stem-loop sequence	UGUCUACAUGGUUAAGUGGAGUUCAUACAUAUAUAGUAUCAAGAAUAGUUUCCUUUAUUUGAUUUGAAGAAUAAGUUCUUGACACUAUAUAUGUGGCGAAUUUCUCUUUAUCAUGUAGACAUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
KA157929.1	ncRNA:24   GUACAGAUGUACUAUUUCUCUUUA   1   *=***||==||||||||||||||| targets:226   AGCUCCUGUAUGAUAAAGAGAAAU   249 Target Full Sequence	2.0	TSA: Vitis vinifera Locus_10278_Transcript_1/3_Confidence_0.750.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA157930.1	ncRNA:24   GUACAGAUGUACUAUUUCUCUUUA   1   *=***||==||||||||||||||| targets:295   AGCUCCUGUAUGAUAAAGAGAAAU   318 Target Full Sequence	2.0	TSA: Vitis vinifera Locus_10278_Transcript_2/3_Confidence_0.750.Vivi mRNA sequence	NA	coding protein	psRNATarget
FQ391312.1	ncRNA:24   GUACAGAUGUACUAUUUCUCUUUA   1   *=***||==||||||||||||||| targets:610   AGCUCCUGUAUGAUAAAGAGAAAU   633 Target Full Sequence	2.0	Vitis vinifera clone SS0AEB15YB12	NA	coding protein	psRNATarget
FQ393381.1	ncRNA:24   GUACAGAUGUACUAUUUCUCUUUA   1   *=***||==||||||||||||||| targets:610   AGCUCCUGUAUGAUAAAGAGAAAU   633 Target Full Sequence	2.0	Vitis vinifera clone SS0AFA26YE09	NA	coding protein	psRNATarget
FQ393411.1	ncRNA:24   GUACAGAUGUACUAUUUCUCUUUA   1   *=***||==||||||||||||||| targets:611   AGCUCCUGUAUGAUAAAGAGAAAU   634 Target Full Sequence	2.0	Vitis vinifera clone SS0AFA26YC09	NA	coding protein	psRNATarget
FQ397651.1	ncRNA:24   GUACAGAUGUACUAUUUCUCUUUA   1   *=***||==||||||||||||||| targets:610   AGCUCCUGUAUGAUAAAGAGAAAU   633 Target Full Sequence	2.0	Vitis vinifera clone SS0AEB6YC11	NA	coding protein	psRNATarget
FQ390501.1	ncRNA:24   GUACAGAUGUACUAUUUCUCUUUA   1   *=***||==||||||||||||||| targets:610   AGCUCCUGUAUGAUAAAGAGAAAU   633 Target Full Sequence	2.0	Vitis vinifera clone SS0AEB17YI15	NA	coding protein	psRNATarget
FQ387893.1	ncRNA:24   GUACAGAUGUACUAUUUCUCUUUA   1   *=***||==||||||||||||||| targets:610   AGCUCCUGUAUGAUAAAGAGAAAU   633 Target Full Sequence	2.0	Vitis vinifera clone SS0AEB25YA03	NA	coding protein	psRNATarget
FQ385668.1	ncRNA:24   GUACAGAUGUACUAUUUCUCUUUA   1   *=***||==||||||||||||||| targets:610   AGCUCCUGUAUGAUAAAGAGAAAU   633 Target Full Sequence	2.0	Vitis vinifera clone SS0AEB31YI07	NA	coding protein	psRNATarget
XM_003631606.3	ncRNA:24   GUACAGAUGUACUAUUUCUCUUUA   1   *=***||==||||||||||||||| targets:657   AGCUCCUGUAUGAUAAAGAGAAAU   680 Target Full Sequence	2.0	PREDICTED: Vitis vinifera NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial (LOC100853527), mRNA	NA	coding protein	psRNATarget
XM_010652296.2	ncRNA:24   GUACAGAUGUACUAUUUCUCUUUA   1   |||-|||||*|||||||*|||||| targets:1304   CAU-UCUACUUGAUAAAUAGAAAU   1326 Target Full Sequence	2.5	PREDICTED: Vitis vinifera protein YIF1B (LOC100262723), mRNA	NA	coding protein	psRNATarget