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BaseInfo

ncRNA ID novel_vvi_miR735
Species Vitis vinifera
Class miRNA
Genome position Chr6:8931960-8932072 [-]
Reference genome 12X
Source SRR1528358
Length 24
Mature sequence(if miRNA) 90 - AUGUUUGGCACUGAUUUUAGAAAA - 113
Stem-loop(if miRNA) --A         C      -U     ACU                  --AUU    GA
   UGUUUGGCA UGAUUU  AGAAA   UUUCUAACCUUUCUAACA     GAAU  U
   ||||||||| ||||||  |||||   ||||||||||||||||||     ||||  A
   GCAAACCGU ACUAAG  UCUUU   GAAGAUUGGAAAGAUUGU     UUUA  A
UGG         U      UU     -GC                  GAAGU    AA
Stem-loop sequence AUGUUUGGCACUGAUUUUAGAAAACUUUUCUAACCUUUCUAACAAUUGAAUGAUAAAAAUUUUGAAGUGUUAGAAAGGUUAGAAGCGUUUCUUUGAAUCAUUGCCAAACGGGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
KA165339.1
ncRNA:24   AAAAGAUUUUAGUCACGGUUUGUA   1
  ||||||||||||||||||||||||
targets:386   UUUUCUAAAAUCAGUGCCAAACAU   409

0.0 TSA: Vitis vinifera Locus_8677_Transcript_6/7_Confidence_0.714.Vivi mRNA sequence NA coding protein psRNATarget