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BaseInfo

ncRNA ID novel_vvi_miR731
Species Vitis vinifera
Class miRNA
Genome position Chr5:7442779-7442975 [-]
Reference genome 12X
Source SRR1528358;SRR1528361;SRR1528368;SRR1528374;SRR1528375;SRR1528377;SRR1528379;SRR1528387;SRR1528391;SRR1528406
Length 24
Mature sequence(if miRNA) 1 - UUAUGACGUAGCAGCUUAUGUGGC - 24
Stem-loop(if miRNA) --     U            AAAAACC     GUGA   UGCCGUUGACCUUUUUAAAAAAAAGUCGAAACCGUAGUCACCAACUACGGCUUUAAACUUAAAGU
  CACAU AGCUGCUACGUC       AGUGG    GUC                                                                 U
  ||||| ||||||||||||       |||||    |||
  GUGUA UCGACGAUGCAG       UAUUU    UGG                                                                 A
CG     U            -------     ----   CAUCAACCACUGAUGCCAAAAUAAAAAGAUUUCACCAAUCUUUGGCAUCAAUGGUUGGUGCCAAA
Stem-loop sequence CACAUUAGCUGCUACGUCAAAAACCAGUGGGUGAGUCUGCCGUUGACCUUUUUAAAAAAAAGUCGAAACCGUAGUCACCAACUACGGCUUUAAACUUAAAGUUAAAACCGUGGUUGGUAACUACGGUUUCUAACCACUUUAGAAAAAUAAAACCGUAGUCACCAACUACGGUUUUAUGACGUAGCAGCUUAUGUGGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_010660302.2
ncRNA:24   CGGUGUAUUCGACGAUGCAGUAUU   1
  *|||*|*||*=|||||||||||||
targets:2804   UCCAAAGAACUUGCUACGUCAUAA   2827

3.0 PREDICTED: Vitis vinifera 2-oxoglutarate dehydrogenase, mitochondrial (LOC100254754), mRNA NA coding protein psRNATarget