ncRNA ID | novel_vvi_miR731 |
Species | Vitis vinifera |
Class | miRNA |
Genome position | Chr5:7442779-7442975 [-] |
Reference genome | 12X |
Source | SRR1528358;SRR1528361;SRR1528368;SRR1528374;SRR1528375;SRR1528377;SRR1528379;SRR1528387;SRR1528391;SRR1528406 |
Length | 24 |
Mature sequence(if miRNA) | 1 - UUAUGACGUAGCAGCUUAUGUGGC - 24 |
Stem-loop(if miRNA) |
--     U            AAAAACC     GUGA   UGCCGUUGACCUUUUUAAAAAAAAGUCGAAACCGUAGUCACCAACUACGGCUUUAAACUUAAAGU   CACAU AGCUGCUACGUC       AGUGG    GUC                                                                 U   ||||| ||||||||||||       |||||    |||   GUGUA UCGACGAUGCAG       UAUUU    UGG                                                                 A CG     U            -------     ----   CAUCAACCACUGAUGCCAAAAUAAAAAGAUUUCACCAAUCUUUGGCAUCAAUGGUUGGUGCCAAA |
Stem-loop sequence | CACAUUAGCUGCUACGUCAAAAACCAGUGGGUGAGUCUGCCGUUGACCUUUUUAAAAAAAAGUCGAAACCGUAGUCACCAACUACGGCUUUAAACUUAAAGUUAAAACCGUGGUUGGUAACUACGGUUUCUAACCACUUUAGAAAAAUAAAACCGUAGUCACCAACUACGGUUUUAUGACGUAGCAGCUUAUGUGGC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_010660302.2 |
|
3.0 | PREDICTED: Vitis vinifera 2-oxoglutarate dehydrogenase, mitochondrial (LOC100254754), mRNA | NA | coding protein | psRNATarget |