Search result

BaseInfo

ncRNA ID	novel_vvi_miR728
Species	Vitis vinifera
Class	miRNA
Genome position	Chr5:17281195-17281313 [-]
Reference genome	12X
Source	SRR1528358
Length	24
Mature sequence(if miRNA)	1 - UAAAAUCAUUGUCAAACACACUCU - 24
Stem-loop(if miRNA)	--AGCU      GU       C   A        A  AUA      C   U    AUUU       UGUUUG  AGUGAUU UAG AAGUGUUU UA   UUUUUA UAC UGAA    U       ||||||  ||||||| ||| |||||||| ||   |||||| ||| ||||    U       ACAAAC  UUACUAA AUC UUUACAAA AU   GAAAAU GUG ACUU    U UCUCAC      UG       A   C        G  GGG      U   U    ACUA
Stem-loop sequence	AGCUUGUUUGGUAGUGAUUCUAGAAAGUGUUUAUAAUAUUUUUACUACUUGAAAUUUUUUAUCAUUCAUGUGUUAAAAGGGGUAGAAACAUUUCCUAAAAUCAUUGUCAAACACACUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
KA172420.1	ncRNA:24   UCUCACACAAACUGUUACUAAAAU   1   |||*|||||||||||||||||||| targets:247   AGAAUGUGUUUGACAAUGAUUUUA   270 Target Full Sequence	0.0	TSA: Vitis vinifera Locus_9722_Transcript_3/3_Confidence_0.778.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA168752.1	ncRNA:24   UCUCACACAAACUGUUACUAAAAU   1   **||||||||||=||||||||||| targets:1148   UUAGUGUGUUUGGCAAUGAUUUUA   1171 Target Full Sequence	1.5	TSA: Vitis vinifera Locus_612_Transcript_1/10_Confidence_0.462.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA154839.1	ncRNA:24   UCUCACACAAACUGUUACUAAAAU   1   |*|||*|*|||||||||||||||| targets:2566   AUAGUCUAUUUGACAAUGAUUUUA   2589 Target Full Sequence	2.0	TSA: Vitis vinifera Locus_4953_Transcript_6/7_Confidence_0.478.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA159796.1	ncRNA:24   UCUCACACAAACUGUUACUAAAAU   1   ||||||*||||||||=|||||||| targets:2580   AGAGUGCGUUUGACAGUGAUUUUA   2603 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_3174_Transcript_7/8_Confidence_0.565.Vivi mRNA sequence	NA	coding protein	psRNATarget
XM_019220958.1	ncRNA:24   UCUCACACAAACUGUUACUAAAAU   1   |||||*||||||=||||||||||| targets:2065   AGAGUUUGUUUGGCAAUGAUUUUA   2088 Target Full Sequence	2.5	PREDICTED: Vitis vinifera transcription termination factor MTERF15, mitochondrial-like (LOC100266539), mRNA	NA	coding protein	psRNATarget
XM_019222750.1	ncRNA:24   UCUCACACAAACUGUUACUAAAAU   1   |||*|*||||||||||||*||||| targets:2319   AGAAUAUGUUUGACAAUGUUUUUA   2342 Target Full Sequence	2.5	PREDICTED: Vitis vinifera pentatricopeptide repeat-containing protein At1g09220, mitochondrial (LOC100250298), mRNA	NA	coding protein	psRNATarget
XM_010652767.2	ncRNA:24   UCUC---ACACAAACUGUUACUAAAAU   1   ||||---||**|*|||||||||||||| targets:1240   AGAGGCCUGACUAUGACAAUGAUUUUA   1266 Target Full Sequence	3.0	PREDICTED: Vitis vinifera DNA repair protein RAD51 homolog 4 (LOC100257115), mRNA	NA	coding protein	psRNATarget