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BaseInfo

ncRNA ID novel_vvi_miR725
Species Vitis vinifera
Class miRNA
Genome position Chr5:20962014-20962127 [+]
Reference genome 12X
Source SRR1528358
Length 23
Mature sequence(if miRNA) 92 - UUAGAAUUACUGUCAAACACACU - 114
Stem-loop(if miRNA) --        GU   UAU                A  U  AC            AAU
  UGUGUUUG  AGU   UUUUAGAAGUGUUUUU GU UU  UAGUACUUGAAA   A
  ||||||||  |||   |||||||||||||||| || ||  ||||||||||||   A
  ACACAAAC  UCA   AAGAUUUUUACAAAAA CA AA  AUUAUGGAUUUU   A
UC        UG   -UU                A  U  AA            AAA
Stem-loop sequence UGUGUUUGGUAGUUAUUUUUAGAAGUGUUUUUAGUUUUACUAGUACUUGAAAAAUAAAAAAUUUUAGGUAUUAAAAAUACAAAAAACAUUUUUAGAAUUACUGUCAAACACACU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
KA152600.1
ncRNA:23   UCACACAAACUGUCAUUAAGAUU   1
  |||*||||||||||||||||||=
targets:740   AGUAUGUUUGACAGUAAUUCUAG   762

1.0 TSA: Vitis vinifera Locus_12264_Transcript_1/3_Confidence_0.333.Vivi mRNA sequence NA coding protein psRNATarget