Search result

BaseInfo

ncRNA ID	novel_vvi_miR708
Species	Vitis vinifera
Class	miRNA
Genome position	Chr3:15185390-15185448 [+]
Reference genome	12X
Source	SRR1528358
Length	24
Mature sequence(if miRNA)	1 - AUCCAAUAUAAUUAAAUUGAACUU - 24
Stem-loop(if miRNA)	--          A     U       AUU   AUCCAAUAUA UUAAA UGAACUU   G   |||||||||| ||||| |||||||   A   UAGGUUGUAU GAUUU ACUUGAA   U AG          A     U       CAA
Stem-loop sequence	AUCCAAUAUAAUUAAAUUGAACUUAUUGAUAACAAGUUCAUUUUAGAUAUGUUGGAUGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
KA161886.1	ncRNA:24   UUCAAGUUAAAUUAAUAUAACCUA   1   |=|||||=||||=||||||||||| targets:262   AGGUUCAGUUUAGUUAUAUUGGAU   285 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_14723_Transcript_3/3_Confidence_0.750.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA142774.1	ncRNA:24   UUCAAGUUAAAUUAAUAUAACCUA   1   |=||||=||||||||||=|||||| targets:1441   AGGUUCGAUUUAAUUAUGUUGGAU   1464 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_3457_Transcript_5/8_Confidence_0.474.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA142775.1	ncRNA:24   UUCAAGUUAAAUUAAUAUAACCUA   1   |=||||=||||||||||=|||||| targets:1341   AGGUUCGAUUUAAUUAUGUUGGAU   1364 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_3457_Transcript_8/8_Confidence_0.474.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA168042.1	ncRNA:24   UUCAAGUUAAAUUAAUAUAACCUA   1   ||--|=||||||||||||||*||| targets:1734   AA--UUAAUUUAAUUAUAUUUGAU   1755 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_5098_Transcript_7/10_Confidence_0.611.Vivi mRNA sequence	NA	coding protein	psRNATarget